Gene Avi_5555 details

Gene Information

• Locus tag: Avi_5555
• Symbol: cheW
• ID: 7381463
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011988
• Strand: +
• Start bp: 554451
• End bp: 554924
• Gene Length: 474 bp
• Protein Length: 157 aa
• Translation table: 11
• GC content: 59%
• IMG OID: 643649135
• Product: chemotaxis protein
• Protein accession: YP_002547372
• Protein GI: 222106581
• COG category: [N] Cell motility; [T] Signal transduction mechanisms
• COG ID: [COG0835] Chemotaxis signal transduction protein

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCGGACGG CGTCAACCAG CCAGGCGGAT GCGCTTGAAA TCCTGGCCTT CAGGCTGCAT 
GGACAGGAAT TCTGCGTCAA GACCACGTCC ATCCGCGAAA TTCGCGGCTG GGCACCGGCC 
ACCTCCTTGC CGCATGCCCC TGCTGAGGTC ATCGGGGTGA TAAACCTGCG CGGCACGGTC 
ATTCCCATCG TCGATCTCGC GGTCAAATTG GGAATGCAGG GCATGGTGGC CAATGAGCGC 
AGCGCCATCA TCGTTGCGGA AGTGGACAGT GCGGTCGTCG GCCTGCTTGT CGATGCCGTG 
TCCGACATCT TGACGGTTCC CGCTGACAGC TTGCAACCCG TGCCGCAAGC TACCAGCACC 
GGAACGGATT TTTCCGATGG CATCATTGTG CAGGGCGCGA GCATGATCTG TTTTCTCAAT 
CTCGAACGGA TGTTTGCCCA CAGCAATTGC AGCGATTGGG GAATTGCCGC TTGA 

 

Protein sequence

MRTASTSQAD ALEILAFRLH GQEFCVKTTS IREIRGWAPA TSLPHAPAEV IGVINLRGTV 
IPIVDLAVKL GMQGMVANER SAIIVAEVDS AVVGLLVDAV SDILTVPADS LQPVPQATST 
GTDFSDGIIV QGASMICFLN LERMFAHSNC SDWGIAA