| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5514 |
|---|
| Symbol | |
|---|
| ID | 7381430 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011988 |
|---|
| Strand | - |
|---|
| Start bp | 510077 |
|---|
| End bp | 511075 |
|---|
| Gene Length | 999 bp |
|---|
| Protein Length | 332 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 643649102 |
|---|
| Product | transcriptional regulator ROK family |
|---|
| Protein accession | YP_002547339 |
|---|
| Protein GI | 222106548 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[K] Transcription |
|---|
| COG ID | [COG1940] Transcriptional regulator/sugar kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGTCCAGTT CGGCCAAACC CTTGCCCACC ATTGAAAGAC CCCGGGAAGA TGCCTCGGGC
CGCGCCCGGG TCCCTGGCTG GGTCATTGGC ATCGACCTTG GCGGCACAAA AATTCTGGCC
GGCATTGCCC GAACCCAGGA GCAGATCATT GCCACACGCG AAGAGCCTAC GCTGCACGGT
GAAGATGCAC CCGTTCTCGC GCAAATGGCA AGACTGATTA CCTCTCTCCT GTCGGACGCC
GGTGCCTTGG CGCAAGAGCT GGACAATGTC GTGATTGGCG TTCCGAGCGC CGTCGATCCT
CAAACCGGGC TTTCGTCGCT TTCTCCCAAT TTGGCTCTGC CGGTTGACCG TCCCCTTGCG
GACCTGATGT CGCGCTTCGT TTCCTGCCCG GTGACGGTGG AAAATGATGT CAATCTCGCC
GCCTATGGCG AAGCATGGGC AGGCGCGGGT CAAGGGCTTG GCTCACTGGT ATTCGTGTCG
TTCGGAACCG GCGTTGGCAT GGGCATCGTC CTGGATGGAG AGCCATGGCG TGGTGCCGCT
GGCCGGGCTG GCGAAATTGC CTACCTGCCT GTGGGCGCGG CACCTCATGA GACAGCCCCC
TTGTCGGAAA ATGGACTTTA CGAGGATGGC GTCGGCACCA GCGGCATCCG CCAAAGGTTC
ACAAGAGACG GCGGGACCGT TGCCGAACTG TTTTCGCTGG CGCGATCAGG CAATGAACAG
GCCCGGCTTG CTATCGATAG CGTGGCAAAA CAGGCATCGA TCGGTATCGC CGCCGTGCAT
GCGCTTCTAG ACCCGGCAGT CACGGTGATT GGCGGCGGCA TCGGCTCCCA GCCAGAATTC
TTCACGCTTC TACAGGCGCA TCTGCAACCC TTGCTGCCCT TCGAAAGCCC GCTGAAACAA
AGCAGGCTCG GCGTGCAGGC GGGGATGATT GGCGCTGTGG CACTGGCCTT GAAAAACCGC
GTCCCGCATC CGGAAAAATC CAATGCGGAA AATCTATAA
|
|---|
| Protein sequence | MSSSAKPLPT IERPREDASG RARVPGWVIG IDLGGTKILA GIARTQEQII ATREEPTLHG
EDAPVLAQMA RLITSLLSDA GALAQELDNV VIGVPSAVDP QTGLSSLSPN LALPVDRPLA
DLMSRFVSCP VTVENDVNLA AYGEAWAGAG QGLGSLVFVS FGTGVGMGIV LDGEPWRGAA
GRAGEIAYLP VGAAPHETAP LSENGLYEDG VGTSGIRQRF TRDGGTVAEL FSLARSGNEQ
ARLAIDSVAK QASIGIAAVH ALLDPAVTVI GGGIGSQPEF FTLLQAHLQP LLPFESPLKQ
SRLGVQAGMI GAVALALKNR VPHPEKSNAE NL
|
|---|
| |