Gene Avi_5484 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_5484 
SymbolmexF 
ID7381404 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011988 
Strand
Start bp479695 
End bp482895 
Gene Length3201 bp 
Protein Length1066 aa 
Translation table11 
GC content59% 
IMG OID643649076 
ProductAcrB/AcrD/AcrF family protein 
Protein accessionYP_002547313 
Protein GI222106522 
COG category[V] Defense mechanisms 
COG ID[COG0841] Cation/multidrug efflux pump 
TIGRFAM ID[TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.149222 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACATTT CCCGATTTTT TGTCGACCGC CCGGTGTTTG CCGGGGTGCT GTCGGTGCTG 
ATCGTCGTCG CCGGGTTGAT CGGCATGCGG TCGCTGCCGA TTTCCGAATA TCCCGATGTC
GTGCCGCCGT CGATTGTCGT GCGGGCCACC TATCCCGGTG CCAATCCGAA GGTGATTGCC
GAAACCGTGG CGACGCCGCT GGAAGAGCAG ATCAACGGCG TCGAGGGCAT GCTTTACATG
TCGAGCCAGG CGACCTCGGA CGGCGTGATG ACGCTGACCG TCACCTTCAA GCTCGGCACT
GACCCCGATC AGGCCCAGCA ACTGGTGCAG AACCGGGTGT CCCAGGCCGA GCCGCGGATG
CCGGAAGAGG TCAAGAGCCT CGGCGTGACC ACGGTCAAAA GCTCTCCCGA CCTGATGATG
GTCGTCAACC TGATCTCCCC AGACAATCGC TATGACATTA CCTACCTGCG CAATTACGGC
GTCCTGAACA TCAAGGACCG GCTGGCGCGG ATTGCCGGCG TCGGTCAGGT TCAGATCTTC
GGTTCCGGCG ATTATTCCAT GCGCATCTGG ATCGATCCGC AGCAGGCGGC CGAACACGGC
TTGGCGGCCA GCGATATTAC CACGGCCATC CGCGCGCAGA ATGTCCAGGC CGCAGCCGGT
ATCATCGGTG GGTCGCCAAG CCTGCCGGGG GTCGATGTGC AGTTGAATGT CAACGCACAG
GGGCGGCTAC AAACACCCGA GGATTTTGGC AATATCATCG TCAAAAGCGG CGCAAACGGT
CAGATCACCC GATTGCGCGA TGTCGCCCGC GTCGAGCTTG GCGCTTCCGA TTACGCACTG
CGCTCCCTGC TGGACAGCAA GGCCGCAGTC GCCATTCCTG TTTTCCAGGC GCCCGGCTCC
AATGCCATCA CCATTTCCGA TGAAGTGGTG AGGACGATGG ATGAGCTGCA ATTGGCCATG
CCAGAAGGCG TGAAATACGA AATCGTCTAC GACACCACCA AATTCGTCCG GTCTTCCATC
GAGAAAGTAG TCGATACCCT GCTGGAAGCC GTGGCGCTGG TCGTGCTGGT CGTCATCCTC
TTCCTCCAGA CCTGGCGGGC GTCGATCATT CCGCTGATCG CGGTTCCGGT GTCGATCATC
GGCACATTTG CCGTGATGTA TGCCTTCGGC TTTTCTATCA ACGCCCTCAG CCTGTTCGGA
CTGGTTCTGG CCATCGGCAT CGTCGTGGAT GATGCCATCG TCGTTGTCGA AAATGTCGAG
CGCAATATCG AAAACGGCCT GTCGCCCCGT CAGGCGACCT ACCGTGCCAT GAAGGAAGTG
TCGGGGCCGA TTATCGCCAT CGCCCTGGTT CTGGTGGCGG TCTTCGTGCC GCTGGCCTTC
ATTTCCGGTC TGTCGGGCCA GTTCTACCGC CAGTTCGCCT TGACCATCGC CATTTCGACC
GTGATCTCGG CGCTGAATTC GCTGACCCTG TCACCGGCGC TTGCCGCTCT GCTTCTGAAG
GGACACCACG CACCGAAGGA CCGGCTGACG CGCGGCCTGG ATTTCATGCT TGGCTGGTTT
TTCAGAGGTT TTAACCGTGT CTTTGGCGCT GGCTCCAATG CCTACGGAAA AAGCGTCGGC
GGTCTTCTCT CACGCAAAAG CATCGTCATG GTGGTTTATC TGGCCCTGGC CGGTGCCACC
TATGGCCTGT TCAATGCTGT TCCGGGCGGG TTCGTGCCAG CGCAGGACAA GCAATATCTG
ATTGGTTTTG CCCAATTGCC GGATGCGGCC AGCCTTGACC GTACGGAAGA TGTTATCAAG
CGGATGAGCG ACATTGCGCT TGCCCAGCCG GGCGTGGCTC ACGCCATCGC TTTTCCGGGC
CTGTCGATCA ATGGTTTCAC CAATTCCTCC AATGCCGGCA TTGTCTTCGT CACCCTGAAG
GATTTCGACG AGCGCAAGAC GCCTGATCTG TCCGGTGGGG CAATTGCCAT GCAGCTGAAC
CAGAAGTTTT CCTCCATTCA GGATGCTTTC ATCGCCATGT TCCCGCCGCC ACCCGTCCAG
GGTCTCGGCA CGACCGGCGG TTTCAAGCTG CAATTGGAAG ACCGGGCTGG ATTGGGCTAT
CAGGCGCTGG ACGAGGCCAC CAAAGCGTTT CTGGCCAAGG CCTATCAGAC ACCGGAGCTG
ACTGGCCTGT TTTCCAGCTT CCAGATCAAT GTGCCGCAGC TCTATGCCGA TCTTGATCGC
GCCAAGGCAG AACAGCTCGG TGTTTCCGTT ACTGATGTGT TCCAGACCCT GCAAATCTAT
CTGGGGTCAC TTTATGTCAA TGACTTCAAT GCCTTTGGCC GCACATACAG CGTTCGCGCC
CAGGCCGATG CCAAGTTTCG GGCCACGCCC GACAATATTG GTCAGTTAAA GGTGCGCTCC
GCATCGGGCC AGATGATCCC GCTGTCTGCG CTGCTGCGGG TCGATCCGAC CACAGGGCCG
GAACGCACCA ACCGCTATAA CGGTTTTCTG GCTGCTGATA TCAATGGGGG TCCGGCACCG
GGCTTTTCGT CCGGTCAAGC ACAGGCGGCA ATTGAAAAGA TCGCAGCTGA TGTACTGCCG
AAAGGCATCG GCTATGAATG GACCGATCTG ACCTATCAGC AAATCCTGGC GGGAAGCTCG
GGCTTCCTGG TGTTTCCACT GGCTTTGCTT CTGGTCTATC TTGTGCTTGC CGCGCAATAT
GAAAGCCTGA CTCTGCCTTT GGCGATCATC ATGATCGTAC CGATGGGCGT ATTGGCTGCA
CTGACCGGGA TCTGGTTGAC CGGAGGAGAC AATAACATCT TCACCCAGAT CGGCCTGATC
GTGCTTGTCG GGCTCTCAGC CAAAAACGCC ATCCTGATCG TCGAATTTGC GCGGGAGCTG
GAATTTGAAG GCAGGACACC GGTTCAGGCG GCTATCGAGG CCAGCCGCTT GCGTCTGCGC
CCGATCCTGA TGACATCCAT GGCCTTCATC ATGGGCGTCG TTCCGCTGGT CACCTCAACC
GGTGCCGGGG CTGAAATGCG TGCGGCCATG GGCATTGCGG TGTTTTCCGG CATGATTGGC
GTGACGGTCT TCGGCATTTT CATGACGCCG GTCTTTTACG TGCTGATCCG CAAACTGGCT
GGCAATCGTC CGCTGGTGCA GCATAACCAC GATGACCATG AGCAGGACAA TGACAGGCCG
ATGCGCATGG CGGCCGAGTA A
 
Protein sequence
MNISRFFVDR PVFAGVLSVL IVVAGLIGMR SLPISEYPDV VPPSIVVRAT YPGANPKVIA 
ETVATPLEEQ INGVEGMLYM SSQATSDGVM TLTVTFKLGT DPDQAQQLVQ NRVSQAEPRM
PEEVKSLGVT TVKSSPDLMM VVNLISPDNR YDITYLRNYG VLNIKDRLAR IAGVGQVQIF
GSGDYSMRIW IDPQQAAEHG LAASDITTAI RAQNVQAAAG IIGGSPSLPG VDVQLNVNAQ
GRLQTPEDFG NIIVKSGANG QITRLRDVAR VELGASDYAL RSLLDSKAAV AIPVFQAPGS
NAITISDEVV RTMDELQLAM PEGVKYEIVY DTTKFVRSSI EKVVDTLLEA VALVVLVVIL
FLQTWRASII PLIAVPVSII GTFAVMYAFG FSINALSLFG LVLAIGIVVD DAIVVVENVE
RNIENGLSPR QATYRAMKEV SGPIIAIALV LVAVFVPLAF ISGLSGQFYR QFALTIAIST
VISALNSLTL SPALAALLLK GHHAPKDRLT RGLDFMLGWF FRGFNRVFGA GSNAYGKSVG
GLLSRKSIVM VVYLALAGAT YGLFNAVPGG FVPAQDKQYL IGFAQLPDAA SLDRTEDVIK
RMSDIALAQP GVAHAIAFPG LSINGFTNSS NAGIVFVTLK DFDERKTPDL SGGAIAMQLN
QKFSSIQDAF IAMFPPPPVQ GLGTTGGFKL QLEDRAGLGY QALDEATKAF LAKAYQTPEL
TGLFSSFQIN VPQLYADLDR AKAEQLGVSV TDVFQTLQIY LGSLYVNDFN AFGRTYSVRA
QADAKFRATP DNIGQLKVRS ASGQMIPLSA LLRVDPTTGP ERTNRYNGFL AADINGGPAP
GFSSGQAQAA IEKIAADVLP KGIGYEWTDL TYQQILAGSS GFLVFPLALL LVYLVLAAQY
ESLTLPLAII MIVPMGVLAA LTGIWLTGGD NNIFTQIGLI VLVGLSAKNA ILIVEFAREL
EFEGRTPVQA AIEASRLRLR PILMTSMAFI MGVVPLVTST GAGAEMRAAM GIAVFSGMIG
VTVFGIFMTP VFYVLIRKLA GNRPLVQHNH DDHEQDNDRP MRMAAE