Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_5484 |
Symbol | mexF |
ID | 7381404 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011988 |
Strand | + |
Start bp | 479695 |
End bp | 482895 |
Gene Length | 3201 bp |
Protein Length | 1066 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 643649076 |
Product | AcrB/AcrD/AcrF family protein |
Protein accession | YP_002547313 |
Protein GI | 222106522 |
COG category | [V] Defense mechanisms |
COG ID | [COG0841] Cation/multidrug efflux pump |
TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.149222 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAACATTT CCCGATTTTT TGTCGACCGC CCGGTGTTTG CCGGGGTGCT GTCGGTGCTG ATCGTCGTCG CCGGGTTGAT CGGCATGCGG TCGCTGCCGA TTTCCGAATA TCCCGATGTC GTGCCGCCGT CGATTGTCGT GCGGGCCACC TATCCCGGTG CCAATCCGAA GGTGATTGCC GAAACCGTGG CGACGCCGCT GGAAGAGCAG ATCAACGGCG TCGAGGGCAT GCTTTACATG TCGAGCCAGG CGACCTCGGA CGGCGTGATG ACGCTGACCG TCACCTTCAA GCTCGGCACT GACCCCGATC AGGCCCAGCA ACTGGTGCAG AACCGGGTGT CCCAGGCCGA GCCGCGGATG CCGGAAGAGG TCAAGAGCCT CGGCGTGACC ACGGTCAAAA GCTCTCCCGA CCTGATGATG GTCGTCAACC TGATCTCCCC AGACAATCGC TATGACATTA CCTACCTGCG CAATTACGGC GTCCTGAACA TCAAGGACCG GCTGGCGCGG ATTGCCGGCG TCGGTCAGGT TCAGATCTTC GGTTCCGGCG ATTATTCCAT GCGCATCTGG ATCGATCCGC AGCAGGCGGC CGAACACGGC TTGGCGGCCA GCGATATTAC CACGGCCATC CGCGCGCAGA ATGTCCAGGC CGCAGCCGGT ATCATCGGTG GGTCGCCAAG CCTGCCGGGG GTCGATGTGC AGTTGAATGT CAACGCACAG GGGCGGCTAC AAACACCCGA GGATTTTGGC AATATCATCG TCAAAAGCGG CGCAAACGGT CAGATCACCC GATTGCGCGA TGTCGCCCGC GTCGAGCTTG GCGCTTCCGA TTACGCACTG CGCTCCCTGC TGGACAGCAA GGCCGCAGTC GCCATTCCTG TTTTCCAGGC GCCCGGCTCC AATGCCATCA CCATTTCCGA TGAAGTGGTG AGGACGATGG ATGAGCTGCA ATTGGCCATG CCAGAAGGCG TGAAATACGA AATCGTCTAC GACACCACCA AATTCGTCCG GTCTTCCATC GAGAAAGTAG TCGATACCCT GCTGGAAGCC GTGGCGCTGG TCGTGCTGGT CGTCATCCTC TTCCTCCAGA CCTGGCGGGC GTCGATCATT CCGCTGATCG CGGTTCCGGT GTCGATCATC GGCACATTTG CCGTGATGTA TGCCTTCGGC TTTTCTATCA ACGCCCTCAG CCTGTTCGGA CTGGTTCTGG CCATCGGCAT CGTCGTGGAT GATGCCATCG TCGTTGTCGA AAATGTCGAG CGCAATATCG AAAACGGCCT GTCGCCCCGT CAGGCGACCT ACCGTGCCAT GAAGGAAGTG TCGGGGCCGA TTATCGCCAT CGCCCTGGTT CTGGTGGCGG TCTTCGTGCC GCTGGCCTTC ATTTCCGGTC TGTCGGGCCA GTTCTACCGC CAGTTCGCCT TGACCATCGC CATTTCGACC GTGATCTCGG CGCTGAATTC GCTGACCCTG TCACCGGCGC TTGCCGCTCT GCTTCTGAAG GGACACCACG CACCGAAGGA CCGGCTGACG CGCGGCCTGG ATTTCATGCT TGGCTGGTTT TTCAGAGGTT TTAACCGTGT CTTTGGCGCT GGCTCCAATG CCTACGGAAA AAGCGTCGGC GGTCTTCTCT CACGCAAAAG CATCGTCATG GTGGTTTATC TGGCCCTGGC CGGTGCCACC TATGGCCTGT TCAATGCTGT TCCGGGCGGG TTCGTGCCAG CGCAGGACAA GCAATATCTG ATTGGTTTTG CCCAATTGCC GGATGCGGCC AGCCTTGACC GTACGGAAGA TGTTATCAAG CGGATGAGCG ACATTGCGCT TGCCCAGCCG GGCGTGGCTC ACGCCATCGC TTTTCCGGGC CTGTCGATCA ATGGTTTCAC CAATTCCTCC AATGCCGGCA TTGTCTTCGT CACCCTGAAG GATTTCGACG AGCGCAAGAC GCCTGATCTG TCCGGTGGGG CAATTGCCAT GCAGCTGAAC CAGAAGTTTT CCTCCATTCA GGATGCTTTC ATCGCCATGT TCCCGCCGCC ACCCGTCCAG GGTCTCGGCA CGACCGGCGG TTTCAAGCTG CAATTGGAAG ACCGGGCTGG ATTGGGCTAT CAGGCGCTGG ACGAGGCCAC CAAAGCGTTT CTGGCCAAGG CCTATCAGAC ACCGGAGCTG ACTGGCCTGT TTTCCAGCTT CCAGATCAAT GTGCCGCAGC TCTATGCCGA TCTTGATCGC GCCAAGGCAG AACAGCTCGG TGTTTCCGTT ACTGATGTGT TCCAGACCCT GCAAATCTAT CTGGGGTCAC TTTATGTCAA TGACTTCAAT GCCTTTGGCC GCACATACAG CGTTCGCGCC CAGGCCGATG CCAAGTTTCG GGCCACGCCC GACAATATTG GTCAGTTAAA GGTGCGCTCC GCATCGGGCC AGATGATCCC GCTGTCTGCG CTGCTGCGGG TCGATCCGAC CACAGGGCCG GAACGCACCA ACCGCTATAA CGGTTTTCTG GCTGCTGATA TCAATGGGGG TCCGGCACCG GGCTTTTCGT CCGGTCAAGC ACAGGCGGCA ATTGAAAAGA TCGCAGCTGA TGTACTGCCG AAAGGCATCG GCTATGAATG GACCGATCTG ACCTATCAGC AAATCCTGGC GGGAAGCTCG GGCTTCCTGG TGTTTCCACT GGCTTTGCTT CTGGTCTATC TTGTGCTTGC CGCGCAATAT GAAAGCCTGA CTCTGCCTTT GGCGATCATC ATGATCGTAC CGATGGGCGT ATTGGCTGCA CTGACCGGGA TCTGGTTGAC CGGAGGAGAC AATAACATCT TCACCCAGAT CGGCCTGATC GTGCTTGTCG GGCTCTCAGC CAAAAACGCC ATCCTGATCG TCGAATTTGC GCGGGAGCTG GAATTTGAAG GCAGGACACC GGTTCAGGCG GCTATCGAGG CCAGCCGCTT GCGTCTGCGC CCGATCCTGA TGACATCCAT GGCCTTCATC ATGGGCGTCG TTCCGCTGGT CACCTCAACC GGTGCCGGGG CTGAAATGCG TGCGGCCATG GGCATTGCGG TGTTTTCCGG CATGATTGGC GTGACGGTCT TCGGCATTTT CATGACGCCG GTCTTTTACG TGCTGATCCG CAAACTGGCT GGCAATCGTC CGCTGGTGCA GCATAACCAC GATGACCATG AGCAGGACAA TGACAGGCCG ATGCGCATGG CGGCCGAGTA A
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Protein sequence | MNISRFFVDR PVFAGVLSVL IVVAGLIGMR SLPISEYPDV VPPSIVVRAT YPGANPKVIA ETVATPLEEQ INGVEGMLYM SSQATSDGVM TLTVTFKLGT DPDQAQQLVQ NRVSQAEPRM PEEVKSLGVT TVKSSPDLMM VVNLISPDNR YDITYLRNYG VLNIKDRLAR IAGVGQVQIF GSGDYSMRIW IDPQQAAEHG LAASDITTAI RAQNVQAAAG IIGGSPSLPG VDVQLNVNAQ GRLQTPEDFG NIIVKSGANG QITRLRDVAR VELGASDYAL RSLLDSKAAV AIPVFQAPGS NAITISDEVV RTMDELQLAM PEGVKYEIVY DTTKFVRSSI EKVVDTLLEA VALVVLVVIL FLQTWRASII PLIAVPVSII GTFAVMYAFG FSINALSLFG LVLAIGIVVD DAIVVVENVE RNIENGLSPR QATYRAMKEV SGPIIAIALV LVAVFVPLAF ISGLSGQFYR QFALTIAIST VISALNSLTL SPALAALLLK GHHAPKDRLT RGLDFMLGWF FRGFNRVFGA GSNAYGKSVG GLLSRKSIVM VVYLALAGAT YGLFNAVPGG FVPAQDKQYL IGFAQLPDAA SLDRTEDVIK RMSDIALAQP GVAHAIAFPG LSINGFTNSS NAGIVFVTLK DFDERKTPDL SGGAIAMQLN QKFSSIQDAF IAMFPPPPVQ GLGTTGGFKL QLEDRAGLGY QALDEATKAF LAKAYQTPEL TGLFSSFQIN VPQLYADLDR AKAEQLGVSV TDVFQTLQIY LGSLYVNDFN AFGRTYSVRA QADAKFRATP DNIGQLKVRS ASGQMIPLSA LLRVDPTTGP ERTNRYNGFL AADINGGPAP GFSSGQAQAA IEKIAADVLP KGIGYEWTDL TYQQILAGSS GFLVFPLALL LVYLVLAAQY ESLTLPLAII MIVPMGVLAA LTGIWLTGGD NNIFTQIGLI VLVGLSAKNA ILIVEFAREL EFEGRTPVQA AIEASRLRLR PILMTSMAFI MGVVPLVTST GAGAEMRAAM GIAVFSGMIG VTVFGIFMTP VFYVLIRKLA GNRPLVQHNH DDHEQDNDRP MRMAAE
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