| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5454 |
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| Symbol | aroE |
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| ID | 7381547 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | - |
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| Start bp | 453645 |
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| End bp | 454514 |
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| Gene Length | 870 bp |
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| Protein Length | 289 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 643649054 |
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| Product | shikimate 5-dehydrogenase |
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| Protein accession | YP_002547291 |
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| Protein GI | 222106500 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0169] Shikimate 5-dehydrogenase |
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| TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.558316 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAGAAA AACCCATTCT TCACGTCGGC CTGATTGGTA CCGATATCCA GCTCTCCAAA
TCCCCTGCCA TGCATATGCG CGAAGGGGCG GCGCACGGGC TGGATTATCG CTACGAATTG
ATCGACATTC ATGTGCGCAA CCTGCCGGAA AGCGCACTGC CTGACCTGCT GGACGAGTGC
CAGACACGCG GATTTGCTGG CACCAATATC ACCCATCCCT TCAAACAGGC AGTCATCCCC
TTTCTTGATG ATCTCTCGGA AGATGCCCGT ATGCTGGGTG CAGTGAATAC GGTCGTCTTC
AGGGATGGCA AGCGGATCGG CCATAATACT GACTGGTCAG GCTTCTACGA AAGCTTCCGG
CGCGGCCTGC CGGATGTACA ATTGAAGCGG GCATTGCTGA TCGGCGCAGG CGGTGCGGGG
GTGGCCGTTG CCCATGCCGC GCTGAAATTG GGGATCGAAC AGTTGGACAT TTTCGACCAA
GACCTCACGA GAGCCGAAGG ACTGGCAGCA GCGCTCAATG CGCGCTTCAG TGAAGGACGC
GCCCATGCTG TCACCGCTCC CAGTCAGTCC TTAGCCGAAG CCGATGGGCT TATTCACGCC
ACCCCGGTCG GGATGCCCGC CCATCCGGGA CTGCCGGTCG CCGCGGATCT GATCGAGCCG
CGCCATTGGG TTGCCGACAT CGTCTATATG CCACTCGTCA CCGAACTGAT CGCAACGGCG
CGCGACAAGG GCTGCCAAAC ACTGCCCGGT GGCGGGATGG CCGTGTTTCA GGCAGTCGGC
GCTTTCCGTC TGTTCTGCGG CTACGAGCCA GATGCCGAGC GGATGAGCGC CCATTTCACT
GAACTTTGTG TTTCGGAGGC AGCCGCATGA
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| Protein sequence | MTEKPILHVG LIGTDIQLSK SPAMHMREGA AHGLDYRYEL IDIHVRNLPE SALPDLLDEC
QTRGFAGTNI THPFKQAVIP FLDDLSEDAR MLGAVNTVVF RDGKRIGHNT DWSGFYESFR
RGLPDVQLKR ALLIGAGGAG VAVAHAALKL GIEQLDIFDQ DLTRAEGLAA ALNARFSEGR
AHAVTAPSQS LAEADGLIHA TPVGMPAHPG LPVAADLIEP RHWVADIVYM PLVTELIATA
RDKGCQTLPG GGMAVFQAVG AFRLFCGYEP DAERMSAHFT ELCVSEAAA
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