Gene Avi_5451 details

Gene Information

• Locus tag: Avi_5451
• ID: 7381545
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011988
• Strand: +
• Start bp: 452505
• End bp: 453230
• Gene Length: 726 bp
• Protein Length: 241 aa
• Translation table: 11
• GC content: 60%
• IMG OID: 643649052
• Product: transcriptional regulator TetR family
• Protein accession: YP_002547289
• Protein GI: 222106498
• COG category: [K] Transcription
• COG ID: [COG1309] Transcriptional regulator

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATGAAAC GGGACGCAAC CACGCGAGAC GGTAAAGAGG CTCGCCCGGC CAAAGGGGAG 
CCTGGCAAAC GCGACCCGGC CAAACGGGAC CCCGAAGGCG TGCGCCGCGA TATTCTTTCG 
GTGGCGATGG AAGAGTTCTC GCAAAACGGC CTGTCTGGCG CGCGCATTGA CGAGATTGCC 
GCCAGAACCC GCACGTCCAA GCGGATGATC TATTATTATT TCGGTGACAA GGAAGGGCTT 
TACCAGCGCG TGCTGGAAGA AGCCTATGGC AAGGTGCGCG GCGGAGAAAT GGACCTGGAG 
CTGGAAGGGC TTGACCCTAT CGCCGCCCTC GACAAGCTCT GTCGCTTCAC CTTCGACCAT 
CACCGCCGCA ACCCTGCCTT CATCCGCATG GTGATCATCG AGAATATTCA TCACGGTCGC 
CATATGCAAT TGTCCGAGAC CATCAGGGGT CTCAACCAAC CGGCTATCGA GGCCCTGCAC 
GGCGTTTTGC GACGCGGGCA GGAGCAGGGA CTGTTCCGGC AGGGCATCGA CCCGCTTGAA 
TTGCACTGGC AGATCAGCGC GCTGTCGTTT TTCAATGTGT CGAACGCAGC CAGCTTTTCC 
GTGATTTTCG GTAATGCGCT GTTTACGGCA GACGGCCAGG AGACCCTGTC GCGCCACGTG 
GCCGACATGG TGCTGCGCTA TGTGCTGCGT GCCGAGCATA TCAGCCCGAT CGAGCAACGC 
GGCTGA 

 

Protein sequence

MMKRDATTRD GKEARPAKGE PGKRDPAKRD PEGVRRDILS VAMEEFSQNG LSGARIDEIA 
ARTRTSKRMI YYYFGDKEGL YQRVLEEAYG KVRGGEMDLE LEGLDPIAAL DKLCRFTFDH 
HRRNPAFIRM VIIENIHHGR HMQLSETIRG LNQPAIEALH GVLRRGQEQG LFRQGIDPLE 
LHWQISALSF FNVSNAASFS VIFGNALFTA DGQETLSRHV ADMVLRYVLR AEHISPIEQR 
G