| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5438 |
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| Symbol | |
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| ID | 7381534 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | + |
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| Start bp | 439260 |
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| End bp | 440015 |
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| Gene Length | 756 bp |
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| Protein Length | 251 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 643649041 |
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| Product | transcriptional regulator GntR family |
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| Protein accession | YP_002547278 |
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| Protein GI | 222106487 |
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| COG category | [K] Transcription |
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| COG ID | [COG2186] Transcriptional regulators |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCGCTGA CCGGGCGCAT CGAAGCCATG ATTGCTGAGC GCAAGCTCAG TCCGGGAGAT
CGTCTGCCGC CGGAGCGCAG CCTGGCGGCG GAGCTTGACG TCTCACGGTC GCGGCTTCGG
GAGGCAATCC AGCAGTTGAT CAGCCGTGGG ATCGTCGTCA GCCGTCGGGG TGGGGGCACT
TTCGTCGCCA TTGAGGACGC CGCTCGATCG CTGGAACGGG CGCTGGAGCC GCTTTTGCCG
ATGGTTCAGG GCGAGGCGGG GTATTGGCGC GATGTGATGG AAATTCGAAA ATCGCTCGAT
ACGGATGCTG CCTATTACGC GGCCTTGCGG GCCACGGATC TGGACAAAGA GCGGATGACA
GTGGCCTTTG CAGCGATGAG TGCTGCGGAA GGCGGCAATC CGCAGAGCCA GGCGCGCGCC
GATGCGGCTT TTCACATGGC AATTGCCGAG GCCTCGCATA ATGTCGTTCT GCGCCAGATT
GTCGCCGGAC TGTCCGAGCT TTTACAGCAG AGCATCGCGC AAAGCCTGAT GCAGTTCTAT
CGCCAGCCGG ACCTTGGGCC AGCGTTAGAG CGCCAGCATG GCCTGATTCT GGACACCATC
CTGGCCGGTC GACCGGATGA GGCCCGCAAG GCAGCGGCAG ATCACCTTGC CTTCGTGGAG
GAAAACCTTC GTGTCATCGA GGACAACCGC GCGCGGGAGC AGCGAGCCTC AGAGGCTTTG
CAAAGACCGG AATTTCAAGG GGAAAACCTA TCATGA
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| Protein sequence | MSLTGRIEAM IAERKLSPGD RLPPERSLAA ELDVSRSRLR EAIQQLISRG IVVSRRGGGT
FVAIEDAARS LERALEPLLP MVQGEAGYWR DVMEIRKSLD TDAAYYAALR ATDLDKERMT
VAFAAMSAAE GGNPQSQARA DAAFHMAIAE ASHNVVLRQI VAGLSELLQQ SIAQSLMQFY
RQPDLGPALE RQHGLILDTI LAGRPDEARK AAADHLAFVE ENLRVIEDNR AREQRASEAL
QRPEFQGENL S
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