| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5411 |
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| Symbol | |
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| ID | 7381511 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | - |
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| Start bp | 409732 |
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| End bp | 412758 |
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| Gene Length | 3027 bp |
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| Protein Length | 1008 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 643649019 |
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| Product | beta-galactosidase |
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| Protein accession | YP_002547256 |
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| Protein GI | 222106465 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3250] Beta-galactosidase/beta-glucuronidase |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.111624 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGACGATCC AAACTTTGCC TGCTAAAGCA CATCTCGATT GGCTTTCCGA TCCCAAGGTC
TTTGCCGTCG GGCGGCTGCC TGCCCATTCC GACCATATCG TCTATCCCGA TGAAGCCTCC
GCCAAGGCGG GTTCTGCCTC GCCGCTTCGC CAGAGCCTTG ATGGCACCTG GAAGTTCCTC
TCCGCCATAT CAGCCGCTGA GCGCCCGGAA GGTTTCCACC ATCACGATTT CGACCGCAGC
GGCTTCGGCG ACATCACCGT ACCCGGTGCC ATGCAATTGC AAGGCCATGG CCGCCCGCAA
TATGTCAACA CCCAATATCC CTGGGACGGC CATGAGGCGC TGGCGCTTGG GCAAGCCGCC
GAGGCCAACC GAGTCGGCTG CTATGCGAGG ACTTTCCAGC TTGACCCCGC CCTTGCCGGA
CAGCGGATCA TCCTCACTTT CGACGGTGTC GAGACCGCCT TCTATGTCTG GCTGAATGGC
CGTTTTATCG GCTATGCCGA AGACAGTTTC ACGCCCTCAC GCTTCGATAT TACCGACGCG
CTGATTGACG GCGATAACCT GCTGGCCGTT GAGGTCTATC ATCGGTCTTC CGGTGCCTGG
CTTGAGGATC AGGATTTCTG GCGTCTGTCG GGCATCATGC GGCCTGTCCG GTTGGAGGCC
TGGCGGAGCC TGCATATCCG CGATCTATTC GTCACCACCG ATCTTGCCGA TGATTTCAAC
AGTGGCTCCC TGCGCTTGCG GCTGGCCCTC GACTTGGCGG AAGAGAGCCC TGGCAGTCTT
GCCGTGACGC TCTACGATCC CAAGGGTGAA ACCGTCCTAA CAACGTCCTT CGATGCCGCA
GCCGAAATGG ATATTGCCCT GCCCGTCACC GCCCCGCTGC TGTGGAGCGC TGAGGCGCCG
CATCTCTATC GCCTGCTGCT GGTCGTAAAG GACAGCAAGG GCGCGACGAT CGAGGCCGTG
CCGCAGCCGG TCGGCTTCCG TCGGTTTGAA ATGCGCGATG GGGTGATGCG TCTCAATGGC
CAGCGCATCG TTTTCCGTGG CATCAACAGG CATGATTTCC ATCCACGCCG GGGACGCGCC
CTGACAGTTG AGGACATGCT CTGGGATGTG CTGTTCTTCA AGCGCAACAA TATCAATGCG
GTGCGCACCA GCCATTACCC AAACCGCAGC GAGTTCTACG CGCTCTGCGA CCAGCACGGC
CTCTATGTCA TCGACGAGGC CAATCTGGAA ACTCACGGCA CATGGTCGGT CGAGACGCTG
GACCCGGACA AAGTCCTGCC CGGCGACCGC GACGAATGGC GACCCGCCGT GCTCGACCGT
GCCGCCAATA TGCTGGAACG CGACAAGAAC CATCCTTGCG TGCTGATCTG GTCTTGCGGC
AATGAGAGCT ATGGCGGCAG CGTGATTGCC GATATGGCCG ATTGGTTTAG GGACCGCGAT
CCCTCGCGCC TCGTCCATTA CGAAGGCGTG TTCCACGACC GCCGCTTTGA TGCGCGCTCC
AGCGACATGG AAAGCCGGAT GTATGCGCGC CCGCAGGACA TCGAGGATTT TCTGCGCAGC
AATCCATCCA AGCCCTTCGT GTCCTGCGAA TATACCCATG CGATGGGCAA TTCCTGCGGC
GGCATGCATC TCTATACCGA CCTCACCTAT CGTTATGATC AGTGCCAGGG CGGCTTTATC
TGGGAATATA TCGAACAGGC TCTCTACGGC ACCCGCCCGG ATGGCAGCGA AGGCCTGCTA
TTTGGCGGCG ATTTTGGCGA CCGGCCAACC GATTACAGCT TCTGCTGCGA CGGCATTATC
ACCGCTGACC GGCAATTGAC CCCGAAAGTC CAGGAAATCA AGGCGCTTTA CCAGCCTGTC
CGGCTGATCC CGGACGCGCA CGGCGTCAAA GTCATCAATG ACAACCTGTT CTTGAACCTC
GACGCTTTCT ATCTGTCCTA TCACCTGCTG AAGGATGGTG TCGCGGTGGA CGAAGGGCGA
GCCGATATTG CGCTTTCAGC CCAGGAACAA ACCTATCTGC GGCTGTCCAT ACCCGTCACG
CAGCAGCCGG GCGAATATGC CCTGCAATGC TCCCTGCGTG AACGCCATGA CCGCGCATGG
GCACCGGCTG ACCACGAAGT GGCGTTTGGC GAACACGTCT GGACGGTGGC AGGTGAAAAA
CCGAACCCGG TTTCCCTCCC CCTCACCCGC GCCGAAGGCA GCTATAATCT CGGCATTTCC
GATGGCCACA GCCGCACCTT GTTCTGCCGT CGCTTTGGCG GGCCGGTGTC GCTGGTCAAT
GCGGCGGGCG TGGAATTCCT GGAACGGCCA CCCCTGCCGA TCTTCTGGCG CGCGCCGACC
GACAATGACC GGGGCGCTGG CTTCGGCTTC AAATTCGGCA GCTGGCGGCG GGCAAGCCTC
GACCAGAAAC AAGCTTCCTA TGCCTATCGT GACGGCGGGG CCGATTATCG CTTTGCCCTG
CCTGATAGCA GCATGCAGGC CACGGTGTCC TACCGCTATG AGGAGGACGG GGCGATTGCC
GTCACCGCCC ATTGGCCGGG CGATGCCAGC CTGCCGTCGC TACCGCTGTT CGGCCTGACG
ATTCCCATGC CAGCAACCTT TAACCGCTTC CGTTATTATG GACTTGGACC GGAGGAAAAT
CACATCGACC GCGCCCATGG CGCACGGCTT GGCATTTACC AGCGCGCGGT GGCCGACAAT
GTCACGCCCT ATGTCATCCC GCAGGAATCC GGCAACCGAA CCGGCGTGCG CTGGGCAGAA
CTGTTCGACG CTGAGGGCAA CACACTGCGC TTCGAGGCGG TGGATATGCC GTTCGAGCTG
GGCGTTTCGC CTTATACGGC TTTCCAGCTG GAAGCCGCCG CCCGGCCCTA TGACCTGCCG
CCAGCCAACC GTACCATTGT CACGCTGATG GCCCGGCAGA TGGGCGTCGG TGGCGACGAT
AGCTGGGGCG CGCTGCCGCA TCCTCAATAC ATGATCGAGC CGGGTGAGCC TCTGACGCTC
ACCTTCAGGA TGAGGGTGAT GGGGTGA
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| Protein sequence | MTIQTLPAKA HLDWLSDPKV FAVGRLPAHS DHIVYPDEAS AKAGSASPLR QSLDGTWKFL
SAISAAERPE GFHHHDFDRS GFGDITVPGA MQLQGHGRPQ YVNTQYPWDG HEALALGQAA
EANRVGCYAR TFQLDPALAG QRIILTFDGV ETAFYVWLNG RFIGYAEDSF TPSRFDITDA
LIDGDNLLAV EVYHRSSGAW LEDQDFWRLS GIMRPVRLEA WRSLHIRDLF VTTDLADDFN
SGSLRLRLAL DLAEESPGSL AVTLYDPKGE TVLTTSFDAA AEMDIALPVT APLLWSAEAP
HLYRLLLVVK DSKGATIEAV PQPVGFRRFE MRDGVMRLNG QRIVFRGINR HDFHPRRGRA
LTVEDMLWDV LFFKRNNINA VRTSHYPNRS EFYALCDQHG LYVIDEANLE THGTWSVETL
DPDKVLPGDR DEWRPAVLDR AANMLERDKN HPCVLIWSCG NESYGGSVIA DMADWFRDRD
PSRLVHYEGV FHDRRFDARS SDMESRMYAR PQDIEDFLRS NPSKPFVSCE YTHAMGNSCG
GMHLYTDLTY RYDQCQGGFI WEYIEQALYG TRPDGSEGLL FGGDFGDRPT DYSFCCDGII
TADRQLTPKV QEIKALYQPV RLIPDAHGVK VINDNLFLNL DAFYLSYHLL KDGVAVDEGR
ADIALSAQEQ TYLRLSIPVT QQPGEYALQC SLRERHDRAW APADHEVAFG EHVWTVAGEK
PNPVSLPLTR AEGSYNLGIS DGHSRTLFCR RFGGPVSLVN AAGVEFLERP PLPIFWRAPT
DNDRGAGFGF KFGSWRRASL DQKQASYAYR DGGADYRFAL PDSSMQATVS YRYEEDGAIA
VTAHWPGDAS LPSLPLFGLT IPMPATFNRF RYYGLGPEEN HIDRAHGARL GIYQRAVADN
VTPYVIPQES GNRTGVRWAE LFDAEGNTLR FEAVDMPFEL GVSPYTAFQL EAAARPYDLP
PANRTIVTLM ARQMGVGGDD SWGALPHPQY MIEPGEPLTL TFRMRVMG
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