Gene Avi_5373 details

Gene Information

• Locus tag: Avi_5373
• ID: 7380726
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011988
• Strand: +
• Start bp: 372224
• End bp: 372874
• Gene Length: 651 bp
• Protein Length: 216 aa
• Translation table: 11
• GC content: 58%
• IMG OID: 643648987
• Product: transcriptional regulator GntR family
• Protein accession: YP_002547224
• Protein GI: 222106433
• COG category: [K] Transcription
• COG ID: [COG1802] Transcriptional regulators

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 0.693668
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCTGAAA ACGCGGGGCG TTGGCTGCGG GACGAAATTG AAAATGCGAT TTTGTCTCAT 
GAATTTGCGC CCGGTCTCCG CTTGGATGAG ACCTTGCTGG CCAATCGGTT CGGTGTGTCA 
CGCACACCCG TGCGCGAAGC GCTGATGCAG CTGAACGCCA TTGGCCTTAT CGAGATCCGT 
CCGCGCCGTG GGGCCGTCGT TATCGATCCG GGACCGCACC GTATCTATCA AATGTTCGAG 
GTCATGGCCG AGCTGGAAGG TCTGGCCGGT TCGCTTGCTG CCCGCCGGCT GGATGAGCAA 
TCCAAAGAGG CCATTCTTGA GGCCCATAAG CGGTGTGAAA TCTCCGCGGG CGCTGGCGAC 
AGCGATAGCT ATTATTATGA CAACGAAGCC TTTCACAAGG CGATCTATGC GGCAAGCCGG 
AGCGAATTTC TGGAGGAGCA GTGCAACCAG CTGCATCGCC GCCTGCGACC CTATAGGCGG 
CTGCAATTGC GGGTGCGCAA CCGCTTGTCG ACGTCATTTT CCGAACATGG GGCGATTGTC 
GAGGCGCTTT TTCGAGGCGA TGTCGAGGAG ACAAGACGGT TGCTCGGAAT GCATGTGGCC 
GTTCAGGGTG AAAGGTTCAG CGACCTCGTT GCCAACATGG CTGCCCGGTG A 

 

Protein sequence

MSENAGRWLR DEIENAILSH EFAPGLRLDE TLLANRFGVS RTPVREALMQ LNAIGLIEIR 
PRRGAVVIDP GPHRIYQMFE VMAELEGLAG SLAARRLDEQ SKEAILEAHK RCEISAGAGD 
SDSYYYDNEA FHKAIYAASR SEFLEEQCNQ LHRRLRPYRR LQLRVRNRLS TSFSEHGAIV 
EALFRGDVEE TRRLLGMHVA VQGERFSDLV ANMAAR