| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5351 |
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| Symbol | dppC |
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| ID | 7380707 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | + |
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| Start bp | 351003 |
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| End bp | 351956 |
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| Gene Length | 954 bp |
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| Protein Length | 317 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 643648968 |
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| Product | ABC transporter membrane spanning protein (dipeptide) |
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| Protein accession | YP_002547205 |
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| Protein GI | 222106414 |
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| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG1173] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGCGCT TGAATAGTGT ATCGGCCAGT GCAGCAGAGG CCATTCTCGA AGATGGCCTG
ATTGGTGAAC CGGTCGCCCA ATGGCGGAGA ACCTGGGGAC GGCTGCTCAG ACTGCGCTCC
GGGCAGGTCG GCTTGTTCAT CATTGGCATG CTGATCCTGA TTGCCATTTT CGCACCGGTT
CTTGCTCCTT ATGATCCCGA TCAGGTGTTG ATCGGTGTCG AGCAGGTCAA GCGCCGCGAG
CCGCCCTGTG TGCATCTGCT TGGATGTGAC GCCAGCCGTC CGCAGCATAT CATGGGTATC
GATGGCAATG CCCGTGATTC CTTCTCGCGT ATTCTCTATG GTACGCGCGT CAGTCTGGTC
ATTGGGCTGA CCACCGTTAC CTGCGCGCTG TTCTTTGGCG TTCTACTGGG GGCGATTGCC
GGGTATTTCC GGGGTTGGGT GGACAATATC ATCATGCGGA TCATGGATGT GATCCTCGGC
TTTCCGTCTT TGCTGCTGGC GATTGCCATC GTTGCGGTTC TGGGACCGGG CATTCGCAAT
GCATTGTTGG CCATCTCCAT CGTCTCGGTT CCTGCCTATG CCCGCGTCAC CCGTGCCAGT
GTGCTGTCAG TGAAAACCTT CGATTTTGTC GCGGCCACGC GGGTGCTGGG TGGCAGCAAA
TGGCGCATCC TGTTTCAAAG AGTGCTGCCT AATGCCATCA CGCCGATTGT GGTGCTGGCT
ACACTTGGGG TGGCCACCGC TATTCTCGAT GCGGCCGGTC TCAGCTTTCT TGGTCTTGGC
GCACAGCCGC CAACGCCGGA ATGGGGGACG ATGCTGGGGG CCGCCCGCAA CGAGATCTTT
TCCGCGCCGC ATCTGGTGTT CTTTCCCGGT CTTGCCATCA TGCTGACCGT GCTTGGCTTC
AACCTTCTCG GAGACGGGCT GCGTGATGCC CTCGATCCGC GGCTCCATAC GTGA
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| Protein sequence | MTRLNSVSAS AAEAILEDGL IGEPVAQWRR TWGRLLRLRS GQVGLFIIGM LILIAIFAPV
LAPYDPDQVL IGVEQVKRRE PPCVHLLGCD ASRPQHIMGI DGNARDSFSR ILYGTRVSLV
IGLTTVTCAL FFGVLLGAIA GYFRGWVDNI IMRIMDVILG FPSLLLAIAI VAVLGPGIRN
ALLAISIVSV PAYARVTRAS VLSVKTFDFV AATRVLGGSK WRILFQRVLP NAITPIVVLA
TLGVATAILD AAGLSFLGLG AQPPTPEWGT MLGAARNEIF SAPHLVFFPG LAIMLTVLGF
NLLGDGLRDA LDPRLHT
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