Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_5347 |
Symbol | |
ID | 7380704 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011988 |
Strand | - |
Start bp | 347007 |
End bp | 347735 |
Gene Length | 729 bp |
Protein Length | 242 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 643648965 |
Product | transcriptional regulator GntR family |
Protein accession | YP_002547202 |
Protein GI | 222106411 |
COG category | [K] Transcription |
COG ID | [COG2186] Transcriptional regulators |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTCCCCA AACGCGCCCT GAGCCAAGAT CCGCATATCG CCGCACTGCC ACCGCTGGAC CGTGTTCAGC AGGTGAGTGG GGCCATGGTC GGCTATATCA ACAAGGCCGG TCTCAAGCGT GGAGATCGCC TGCCGACGGA ACGCGAATTG ATGAACGCGC TCGGTGTTGG CCGTTCAACA GTGCGTGAAG TGATCGGGCG GTTTCAGGCT TTGGGCGTGG TGGAGACCCG AAAAGGCAGC GGGACCTATC TTTTGCAGCC TGTGAGTGCT GCCACGGTCC ACATGCCGTT GATGCTGGAG ACGGTGAATT TACGCGATGC TCTTTTGCAA ACGCTGGAAG TGCGTCGTGG CATTGAAGTC GAGGCCGGAG CCTTGGCTGC GATGCGCCGA ACGGAAGAGG ATTTGCGGAT CATCGAGGAA AAGCTCGATG AAATGGAGCG GGTGCATCTG GCCAAGGGAA CATCCGGCAA GGAAGATCTG GCTTTCCATG TGGCGATCTA CGATGCCACG CATAACCCGC TGTTCAAACA GCTTCTGGAG CAGATGCGCG AAGCCTTCGA ACGCTTCTGG CATAAGCCGT TTGACCGGCC CGATTTTGCC CGCCGCTCCT TTCCCTTTCA TCGCACCTTG TTCAGCGCCA TTGCTGACCA GGACAGTGAA GGTGCGCGCC GTGAAACCCT CAAAATTCTT GCCGTGGTGG AAGAAGACAT CAAGGAAATG TCCAAATGA
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Protein sequence | MFPKRALSQD PHIAALPPLD RVQQVSGAMV GYINKAGLKR GDRLPTEREL MNALGVGRST VREVIGRFQA LGVVETRKGS GTYLLQPVSA ATVHMPLMLE TVNLRDALLQ TLEVRRGIEV EAGALAAMRR TEEDLRIIEE KLDEMERVHL AKGTSGKEDL AFHVAIYDAT HNPLFKQLLE QMREAFERFW HKPFDRPDFA RRSFPFHRTL FSAIADQDSE GARRETLKIL AVVEEDIKEM SK
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