| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5255 |
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| Symbol | ugpQ |
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| ID | 7381376 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | + |
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| Start bp | 250539 |
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| End bp | 251261 |
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| Gene Length | 723 bp |
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| Protein Length | 240 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 643648888 |
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| Product | glycerophosphodiester phosphodiesterase |
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| Protein accession | YP_002547125 |
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| Protein GI | 222106334 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0584] Glycerophosphoryl diester phosphodiesterase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.457448 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGACCAAGA TCGTATCCCA TCGCGGGGCC AACCAGTTTG CGCCGGAAAA TACCTTTGCG
GCTGCTGACC TCGCCCTTCA GCAGGGGGCA GACTACATCG AGCTTGATGT GCGAGAGAGT
GCGGACGGTG TGCTCTACGT CTTTCACGAT GAAACCTTGG ACCGCACCAC CAATGGCACC
GGCCCCATCG GCCATGCGAC ATCGGAGGAA ATCGATGCGC TGGACGCCGG AAGCTGGTTC
TCCCCAGCCT TCAAAGGTGC TGCCGTGCCC AGGCTCGACG CCTATCTCCA GCACCTGCGT
GGCCGCGCCG GTGTCTATAT CGAGCTGAAA TATTGCGATC CGGCCAAAGT GGTCGCACTG
GTGCGAAGCC TTGGCATGGT GGGCGATACA TTCTATTTTT CATTTTCCGA AGACATGCGC
CGCGATCTGC AATTGATCGC GCCGGAATTC CGTAAGATGA TGACGCTTGA TATTGCCAAG
TCGCCGTCTC TGGTCGGTGC CGTGCATCAC GCCACGATCA TCGAGATGAC TGTTGAACAC
ATGCGGCGGC CAGGTTTACT CGAAGCGTGC CGCAAAGCCG GGCTTGAGGT GATGATCTAT
TACGCAGGGG ACGAGATGGC CATTCACCGC GAAATCGCCA AAGCCGGTGT CGATTACATC
AATCTCGACC GTCCGGATCT GTTTAATGCT GCCCGGTGCG ACCATGTGGA AGCCGCCGCC
TGA
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| Protein sequence | MTKIVSHRGA NQFAPENTFA AADLALQQGA DYIELDVRES ADGVLYVFHD ETLDRTTNGT
GPIGHATSEE IDALDAGSWF SPAFKGAAVP RLDAYLQHLR GRAGVYIELK YCDPAKVVAL
VRSLGMVGDT FYFSFSEDMR RDLQLIAPEF RKMMTLDIAK SPSLVGAVHH ATIIEMTVEH
MRRPGLLEAC RKAGLEVMIY YAGDEMAIHR EIAKAGVDYI NLDRPDLFNA ARCDHVEAAA
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