| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5247 |
|---|
| Symbol | phnA |
|---|
| ID | 7381369 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011988 |
|---|
| Strand | - |
|---|
| Start bp | 241574 |
|---|
| End bp | 241969 |
|---|
| Gene Length | 396 bp |
|---|
| Protein Length | 131 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 643648881 |
|---|
| Product | alkylphosphonate uptake protein |
|---|
| Protein accession | YP_002547118 |
|---|
| Protein GI | 222106327 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG2824] Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism |
|---|
| TIGRFAM ID | [TIGR00686] alkylphosphonate utilization operon protein PhnA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTCGAAT TAACGGATGT TCTCGTTGCA ACACCGGGCC TTGCTCCTGT AAGCGACGGA
GATCAGATAA CATTCACTTC AGGAGCAGGG TCCGTGGCTG GCGATAACGA CGATTACATT
TATGATGAAG CGACCGGCGA ATGGCGCCCC GCCTCCGAAG TGGCGGCCGC AGCCGCTCAG
GCATCGGAGG TCCGTGATGC GTCCGGCAAC ATCTTGCAGG ATGGCGATTC CGTCACCCTC
ATCAAGGATC TGAAGGTCAA GGGCGCTGGC CAGACGCTGA AACAGGGTAC CGTCATCAAG
TCGATCCGCC TCACCGACAA CCCGGAAGAG ATCGATTGCC GTCACGACGC GATCAAGGGA
CTGGTGCTGC GGACGGAATT CGTCAAGAAG CGTTGA
|
|---|
| Protein sequence | MFELTDVLVA TPGLAPVSDG DQITFTSGAG SVAGDNDDYI YDEATGEWRP ASEVAAAAAQ
ASEVRDASGN ILQDGDSVTL IKDLKVKGAG QTLKQGTVIK SIRLTDNPEE IDCRHDAIKG
LVLRTEFVKK R
|
|---|
| |