| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5087 |
|---|
| Symbol | bgl |
|---|
| ID | 7380900 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011988 |
|---|
| Strand | + |
|---|
| Start bp | 79990 |
|---|
| End bp | 81351 |
|---|
| Gene Length | 1362 bp |
|---|
| Protein Length | 453 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 643648753 |
|---|
| Product | beta-glucosidase |
|---|
| Protein accession | YP_002546990 |
|---|
| Protein GI | 222106199 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2723] Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase |
|---|
| TIGRFAM ID | [TIGR03356] beta-galactosidase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.167744 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | CTGGTTCTTA CCTTCAAAGT GAAGAAACAT ATCATGTCGA GATCTTTTCC TCCTGATTTT
CTCTGGGGCG TGGCGGCCTC TGCCTTTCAA ACGGAAGGTG CTGTCCATGC CGATGGGCGC
GGACCCAGCG TGTGGGATGT TTACAGCCAC ACACCGGGCC GCACCACCAA TGGCGATACG
GCCGATATCG CCTGTGACCA CTACCACCGC TACCCGGAAG ACATCGCGCT GATGCGCGGG
CTTGGGGTGA AGGCCTATCG GCTTTCCACC GCATGGCCAC GCATTTTCCC AAGCGGCAGC
GGGCAGGTGA ATCAACGGGG ATTGGATTTC TACGACCGGG TGATCGATCT GGCCTTGCAT
GAGGGGATTG AGCCGTGGAT TTGCCTGCAT CATTGGGACA TGCCCGTCGC CGTTGAAGAC
AACGGCGGCT GGCGCAATCG TGATACGGCC AAGATTTTCG CCGATTACGC CGCCGTTATC
ACCAGGCATT TTGGTGATCG GGTCAAACGC TTTGCGCCGA TCAATGAGCC AAATGTGATT
CCGTGGGTGG CCTATAATGT CGGGCGTCAC GCGCCCGGCA AGCAGGATTA TCCTTCCAGC
CTTCAGGCCA TTCATACGCT TAATCTCGCC CATGGTTACA CCGTGTCTGC GGTGCGGGCA
GAAGCACCAC AAGCCGAGGT GGGCAACATC GTCTCCCTTG GCCCCGTGCG CCCACATTAT
GACGATGCCG CCCACGAAGA AGCACGGATT CTCGGCGATT GCCTCTGGCG CAGGGTCACG
GTTGATCCGC TCTGGCTCGG CACCTACCCG GAGCCGATTG CGGATGCCAT GCAGCCCTTC
ATTCAACCGG GGGACATGGA GGCCATCTCG CAAAAAATGG ATTTCTTCGG CCTCAATCAT
TACAATCCGG TGTTTGTTGG CCCGAATGAA AACACCACTT TTGGCGTATC GGAAACCGCA
CCCCCGACAG GCATGGGACC ACTCACCGAT GTCAATTGGG TGGTTGATCC GGCAGCCTTT
CTGGAACAGA TCCGCGATAC CAGCGCCCGC TATGGCAAGC CAACCATTTA CATCACCGAA
AACGGCGCCT CCTACCCGGA TGCGCTTGGC CCAGACCGGA AGGTGATCGA CAACGACCGC
ATCGCCTATT TCAATGGCTA TCTGAATGCG CTGTTGGATG CGCTGGATGA GGGCCATGAC
ATCAGAGGCT ATTTCGCCTG GTCGCTGATG GATAATTTCG AATGGGGCCG TGGCTATTCC
AAGCGGTTCG GCTTGGTTTA CGTCGATTAT CCCACCCTGC AACGCATTCC CAAACAGTCC
TATCATTGGC TCAGCGGTGT GATTGCCGCC AATGCCCTAT AA
|
|---|
| Protein sequence | MVLTFKVKKH IMSRSFPPDF LWGVAASAFQ TEGAVHADGR GPSVWDVYSH TPGRTTNGDT
ADIACDHYHR YPEDIALMRG LGVKAYRLST AWPRIFPSGS GQVNQRGLDF YDRVIDLALH
EGIEPWICLH HWDMPVAVED NGGWRNRDTA KIFADYAAVI TRHFGDRVKR FAPINEPNVI
PWVAYNVGRH APGKQDYPSS LQAIHTLNLA HGYTVSAVRA EAPQAEVGNI VSLGPVRPHY
DDAAHEEARI LGDCLWRRVT VDPLWLGTYP EPIADAMQPF IQPGDMEAIS QKMDFFGLNH
YNPVFVGPNE NTTFGVSETA PPTGMGPLTD VNWVVDPAAF LEQIRDTSAR YGKPTIYITE
NGASYPDALG PDRKVIDNDR IAYFNGYLNA LLDALDEGHD IRGYFAWSLM DNFEWGRGYS
KRFGLVYVDY PTLQRIPKQS YHWLSGVIAA NAL
|
|---|
| |