Gene Avi_5061 details

Gene Information

• Locus tag: Avi_5061
• ID: 7381218
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011988
• Strand: +
• Start bp: 54302
• End bp: 55006
• Gene Length: 705 bp
• Protein Length: 234 aa
• Translation table: 11
• GC content: 56%
• IMG OID: 643648732
• Product: transcriptional regulator GntR family
• Protein accession: YP_002546969
• Protein GI: 222106178
• COG category: [K] Transcription
• COG ID: [COG1802] Transcriptional regulators

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGATGGAT GCATGAACGG AACGATCAGG GGCGGACAGT TGGACCGCTC GCGACAGGTG 
GCATTGCAGG TTCATGAAAT CCTGCGCGAC AGGATTCTGA AGGTGCAATT GGTGCCGGGC 
ACGATCTTGT CGCGTGCCTC ATTGCAACTG GAATTCGGAG TGAGCCAGAC ACCGGTGCGC 
GATGCGCTGA TGCGCTTGCA GGAAGAGGAT ATTGTCGAAG TCTATCCGCA ATATGCAACG 
GTCGTTGCCA AGATCGATAT CGATCACGCC AGACAGGCGC AGTTCCTTCG GCTATCGATC 
GAACTCGAAG CGGTCCGGCG CCTGACTGAG GAGGCGCCGG GCGAGACCGC CAAGGAATTG 
GGCGCCATCC TGGCCCGTCA AAAAGAGGTG GCCACACAAG AGACCTATGA CACTTTTGAT 
GGCATAGACC GCGAGTTTCA CCGTAAACTT TATGAGAAGA GCGGCATTCT ACAGCTATGG 
GCAAATGTGC GACGACAAAG CGTCCATCTC GACCGGCTGC GGCGTCTCAA CCTGCCAATG 
CCCGGCAAGA TGCAGACCGT ACTCGATGAT CATGAAGCGA TTGTCGCAGC CATTGCATCC 
GGCAATCCCG AGGCTGCGGC CTCGGCGCTC AGAAAACACC TGTCGGGTAC GCTTTCGATC 
ATCGATCTCA TCAGCGCGGA ATACCCGGAT TATATTCGCA AGTGA 

 

Protein sequence

MDGCMNGTIR GGQLDRSRQV ALQVHEILRD RILKVQLVPG TILSRASLQL EFGVSQTPVR 
DALMRLQEED IVEVYPQYAT VVAKIDIDHA RQAQFLRLSI ELEAVRRLTE EAPGETAKEL 
GAILARQKEV ATQETYDTFD GIDREFHRKL YEKSGILQLW ANVRRQSVHL DRLRRLNLPM 
PGKMQTVLDD HEAIVAAIAS GNPEAAASAL RKHLSGTLSI IDLISAEYPD YIRK