| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5032 |
|---|
| Symbol | idnO |
|---|
| ID | 7381195 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011988 |
|---|
| Strand | + |
|---|
| Start bp | 27769 |
|---|
| End bp | 28527 |
|---|
| Gene Length | 759 bp |
|---|
| Protein Length | 252 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 643648709 |
|---|
| Product | gluconate 5-dehydrogenase |
|---|
| Protein accession | YP_002546946 |
|---|
| Protein GI | 222106155 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.930013 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCGCTTG GTCTTTTCGA TCTGACGGGT CGCCGCGCGT TGGTGACCGG GTCTTCGCAA
GGCATTGGCT TTGCCCTGGC GCAAGGTTTG CGGGCAGCAG GCGCGACCGT GATCGTCAAC
GGACGCGATG AAGCTAAGCT TGCCGCCGCC GCCGCCCGGA TCGGCGACGG CTGCGATAGT
CTGGCTTTCG ATGTCACCGA CCATCAGGCG TCGCGGGATG CCGTCGATGG CTTCGAGGCC
ACCAAAGGGC CGATCGACAT TCTCGTCAAC AATGCCGGAA TGCAGTTTCG CGGCCCGCTG
GAAGAGTTTC CGGCAGATGC TTTCGAGCGG CTGCTGCGCA CCAATATTTC CAGCGTCTTC
AATGTCGGCC AGGCGGCGGC CCGGCATATG ATCAAGCGCG GCGCTGGCAA GATCATCAAT
ATCGCCAGTG TGCAGACGGC GCTGGCCCGG CCGTCGATTG CGCCGTATAC AGCTACCAAA
GGTGCGGTCG GCAATCTCAC CAAGGGCATG GCGACCGACT GGGCCAAATA TGGGCTGCAA
TGCAACGCCA TCGCGCCCGG CTATTTTGAT ACGCCGCTGA ATGCAGCGCT GGTTGCCGAT
CCTGATTTCT CGACGTGGCT GGAAAAGCGC ACGCCAGCTG GCCGCTGGGG CAAGGTGGAG
GAATTGGTGG GTGCTTGCAT CTTCCTGGCG TCTGGAGCCT CATCCTTCGT CAATGGCCAC
GTGCTTTATG TCGATGGTGG CATCACGGCC TCACTCTAG
|
|---|
| Protein sequence | MSLGLFDLTG RRALVTGSSQ GIGFALAQGL RAAGATVIVN GRDEAKLAAA AARIGDGCDS
LAFDVTDHQA SRDAVDGFEA TKGPIDILVN NAGMQFRGPL EEFPADAFER LLRTNISSVF
NVGQAAARHM IKRGAGKIIN IASVQTALAR PSIAPYTATK GAVGNLTKGM ATDWAKYGLQ
CNAIAPGYFD TPLNAALVAD PDFSTWLEKR TPAGRWGKVE ELVGACIFLA SGASSFVNGH
VLYVDGGITA SL
|
|---|
| |