| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_9810 |
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| Symbol | avhD4 |
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| ID | 7379953 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011986 |
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| Strand | - |
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| Start bp | 10420 |
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| End bp | 12519 |
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| Gene Length | 2100 bp |
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| Protein Length | 699 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 643648242 |
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| Product | conjugative coupling protein |
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| Protein accession | YP_002546479 |
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| Protein GI | 222102338 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGAAGG GCTTCAAAGC CGTCTACCTA GCGTTTTGCC TCGCGGTTGC CTTTGCGGCC
TGGATGCTTG GATATGGCGC TGGCCTTCAC CTTTTTTACG GCGATGGCAG GATCCTCGAT
ACAACGATAC GAAGCAATCC TTTCGCGCCA ATCCAACAGT TCTGGGCTTA CAGCGATAAT
CCTACCCTGC AGAAGGTCGC CCTGGGGTCA TTGGTGCCTG CCTTCGTGAT CGCCGCAATT
ACTGCATATC TCGGCCTTAG GCCAGTCACG AGCCCATTAG GGGACGCCGC GTTTCAGGAC
ATCGCGGGTT TGCGGATGGG GAAATGGTTC GGCAAGAAGG GGCATATTTT CGGTGGTTTT
GGAGGCAAGG TCCTCCGGGC GCAGGACGAT CGCCATCACC TGATCATCGG GCCGACAAGG
TCCGGTAAAG GTGCCGGTTA CGTCATTCCG AATGCTCTCA TGCATGAAGG CTCGATGATC
GTTACCGACT TGAAGGGCGA GGTCTTCAGG GCGACGGCCG GCTATCGGAA GAAGAATGGC
AGCCAGGTCT TCATTTTCGC GCCGGGGTCG GAGCGCACGA ACAGCTACAA TCCGCTCGAT
TTTGTGAGAC CAGAACGGGG CAATCGAACA ACCGACATTC AAAATATCGC CAGCATTCTT
GTCCCGGAGA ACACGGAGTC GGAAAACTCG GTATGGCAAG CGATCGCGCA AAACGTCATT
GCAGGCGCAA TAAGCTACAT GCTGGAAAGC CCATTCTACC ACGACCGCCG CAATCTTGGC
GAAATCAACT CCTTCTTCAA CAGCGGCATG GATCTCCAGG CTTTGATGAA GCACATCAAA
GAGAAAGAAC CTTACCTCTC GAAGTTTACA GTCGAGAGTT TCAACTCATA TATCTCATTG
TCTGATCGAG CCGCTGCATC AGCCCTTCTT GATATCCAGA AGGCTATGCG ACCCTTCAAG
AACGAACGCG TTGTCGCAGC AACGAACTTC ACCGACATGG ACCTTCGTGC CATGAAGCGG
CGGCCTATAA CGATCTATCT CGCCCCGAAC ATCACTGACA TCACGCTTCT CAGGCCCTTG
CTGACCCTGT TTGTCCAGCA GGTCATGAAC ATTCTCACGC TCGAACACGA TCCAAATTCT
GTACCCGTCT ATTTCCTCCT CGATGAGTTT CGCCAGCTGA AACGCATGGA TGAGATCATG
ACGAAGCTGC CCTATGTGGC CGGTTACAAC ATCAAGCTCG CTTTCATCAT TCAGGATCTT
AAAAACCTCG ATGAGATATA TGGGGAGACC TCGCGGCACT CGCTCTTGGG GAATTGCGGC
TATCAGTTGA TCCTTGGTGC AAATGATCAG GCCACGGCCG ACTATGCGTC ACGAGCTCTG
GGCAAAAGGA CCATTCGCTA TTCCTCAGAG TCTCGCACCA TAGAAATAAT GGGACTTCCA
CGGCGAACGA AGGTCGAGCA AATTCGCGAG CGAGACCTCA TGATGTCTCA GGAGGTCCGG
CAAATGCCGG AAAATAGAAT GATCCTGCTG GTAGAGGGCC AGCGTCCGAT CTTTGCCGAA
AAGCTTCGGT TCTTCAACAC GCAGCCATTC AAAGCTGCTG AAGCCTATGC CCAGGCTCAC
ATCCCAAGCG TTCCGGATAT TGAGTACCTT CCATCGAAGC CGGTCCCGGC GACGACTGCA
GAATATGAGA ATGCGGGAAA CGTAGCGCCG GTAGCTGAGC CTTCGGCTGC AGTCCAAACG
AACATACCGG AAGCCGGTCC CGCTCAGAAA GAACCGGAAA AGCAGATTCC TGCAGCGGAG
GCGCCGGAGC CAGCGCAAGC CACAGCGCCG GCCGCCCCTC CAGCGAAGCG CACCGTCAAC
CCCGCGGCGT TGACCTCGAA AACCAAAGCC ACGCCCGCAG CCCGGCCGAA AGCCCCGAAG
CGCAATAGCT CAACGTCAGA TGACATCGCA CGGCGAAAGG AAATAGAAGC GCTGCAATCT
CTTGCAGTAC AAAGGCTTCG CGAACAGGTC GAGAAAGCCA GCGCCGGAAA GAACCCGACG
AAGCGGAAAA ACATCATGGA CGTTTTCGCT GCAACCGTTC CAGATCCAGA GACAGCCTGA
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| Protein sequence | MTKGFKAVYL AFCLAVAFAA WMLGYGAGLH LFYGDGRILD TTIRSNPFAP IQQFWAYSDN
PTLQKVALGS LVPAFVIAAI TAYLGLRPVT SPLGDAAFQD IAGLRMGKWF GKKGHIFGGF
GGKVLRAQDD RHHLIIGPTR SGKGAGYVIP NALMHEGSMI VTDLKGEVFR ATAGYRKKNG
SQVFIFAPGS ERTNSYNPLD FVRPERGNRT TDIQNIASIL VPENTESENS VWQAIAQNVI
AGAISYMLES PFYHDRRNLG EINSFFNSGM DLQALMKHIK EKEPYLSKFT VESFNSYISL
SDRAAASALL DIQKAMRPFK NERVVAATNF TDMDLRAMKR RPITIYLAPN ITDITLLRPL
LTLFVQQVMN ILTLEHDPNS VPVYFLLDEF RQLKRMDEIM TKLPYVAGYN IKLAFIIQDL
KNLDEIYGET SRHSLLGNCG YQLILGANDQ ATADYASRAL GKRTIRYSSE SRTIEIMGLP
RRTKVEQIRE RDLMMSQEVR QMPENRMILL VEGQRPIFAE KLRFFNTQPF KAAEAYAQAH
IPSVPDIEYL PSKPVPATTA EYENAGNVAP VAEPSAAVQT NIPEAGPAQK EPEKQIPAAE
APEPAQATAP AAPPAKRTVN PAALTSKTKA TPAARPKAPK RNSSTSDDIA RRKEIEALQS
LAVQRLREQV EKASAGKNPT KRKNIMDVFA ATVPDPETA
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