| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_9269 |
|---|
| Symbol | trbB |
|---|
| ID | 7367865 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011984 |
|---|
| Strand | - |
|---|
| Start bp | 209761 |
|---|
| End bp | 210732 |
|---|
| Gene Length | 972 bp |
|---|
| Protein Length | 323 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 643644428 |
|---|
| Product | conjugal transfer protein TrbB |
|---|
| Protein accession | YP_002542725 |
|---|
| Protein GI | 222083322 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
|---|
| TIGRFAM ID | [TIGR02782] P-type conjugative transfer ATPase TrbB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGACCCAGC TGCGCTCTCA CTCCCGTCTC GTCCGCAAAC TCCAGGACGC ACTCGGCGAC
CAGCTCTGCG TCGCGCTCGA TGACGCAACG GTCGTCGAGA TCATGCTCAA CCCCGATGGC
AAGCTCTTCA TCGAGCGCCT GGGCCATGGC GTGGCTCCGG CCGGCGCACT TAGCGCGGCT
GCGGCCGAAG TCATCATTGG AAGCGTCGCC CACGCCCTGC AGTCGGAGGC CGACGACGAG
CGGCCGATCA TCTCGGGCGA GTTGCCGATC GGCGGGCACC GCTTCGAGGG CCTGCTGCCG
CCGGTCGTTT CAGGACCGAG CTTCACAATC CGCCGGCGCG CGTCGCGCCT GATCCCGCTC
GACGACTACG TGAAGCACAA GATCATGACC GAAGCGCAGG CATCGGTTCT GCGCAGCGCG
ATCTCGTCTC GCATGAACAT CGTGATTTCC GGTGGCACGG GCTCCGGCAA GACGACGCTT
GCCAATGCAG TCATTGCCGA AATCGTCGCC AATGCGCCGG ACGACCGGAT CGTCATCCTG
GAGGACACCG CCGAGATCCA GTGCGCCGCT GAGAACGCGG TCGCGCTCCA CACAAGCGAC
ACGATCGACA TGGCCCGGCT TCTCAAGAGC ACGATGCGCT TGCGGCCTGA TCGCATCATC
GTCGGAGAGG TCCGCGACGG CGCGGCGCTG ACGCTGCTCA AGAGTTGGAA CACCGGCCAT
CCGGGCGGTG TAACGACCAT TCATTCGAAC ACAGCAATGT CGGCTCTTCG CCGGCTCGAG
CAACTGACCG CGGAAGCGAG CCAGCAGCCC ATGCAGGAGG TGATCGGTGA GGCGGTCGAT
CTGATCGTCT CCATAGAACG AACGGGGAAG GGGAGGCGGG TCCGGGAGGT CATCCATGTC
GAGGGTTTCG CCAACTCCCG CTACCGGACC GAACACTACG CCCAGATCGA TGAGGATAGC
CATGTCGCAT AA
|
|---|
| Protein sequence | MTQLRSHSRL VRKLQDALGD QLCVALDDAT VVEIMLNPDG KLFIERLGHG VAPAGALSAA
AAEVIIGSVA HALQSEADDE RPIISGELPI GGHRFEGLLP PVVSGPSFTI RRRASRLIPL
DDYVKHKIMT EAQASVLRSA ISSRMNIVIS GGTGSGKTTL ANAVIAEIVA NAPDDRIVIL
EDTAEIQCAA ENAVALHTSD TIDMARLLKS TMRLRPDRII VGEVRDGAAL TLLKSWNTGH
PGGVTTIHSN TAMSALRRLE QLTAEASQQP MQEVIGEAVD LIVSIERTGK GRRVREVIHV
EGFANSRYRT EHYAQIDEDS HVA
|
|---|
| |