Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_9257 |
Symbol | trbI |
ID | 7367855 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011984 |
Strand | - |
Start bp | 201057 |
End bp | 202370 |
Gene Length | 1314 bp |
Protein Length | 437 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 643644418 |
Product | conjugal transfer protein TrbI |
Protein accession | YP_002542715 |
Protein GI | 222083312 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG2948] Type IV secretory pathway, VirB10 components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.0531878 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGTTCAAT CGCTCAAGCT CGGCGGCACT GTCAACGAGG AGACAGGCCC CGGCATGCGC CGGATAAACC GTCTCCCGAT CATCGTCGTG GTCGTGCTGG TGGTCGCCTT CCTCGCGGTC ATCTTCTACG GCCTGTCGTC GCGCGGGCTA TATTTCCGCG ATACCGGACC GGACACAAGC TCCGGCAATC CGGCGTCGAC CTTCGCCGAT CAGATCAAGC GTGGCGTTTC CGACGGCATC ATCGGCGAGC CGCAGCAGGT GACGACGCTG CAGCCGACGC CGGTCGAGAC GCAAGAGGAG AAGCGCTCCG TCAATCCGTT CACACCGCAG CCCGGTCAAA GGGAAGAGGC ACGGCCGGAA CAGCAACTGG AATCTGAAAA GGTCTGGCGC GCCCGTTTGC AGCGCGAGCA GGAAGAGCAA TATCTTCGCG AGCGGCAGCG CCAGAGAATG GCCCGGCTGC AGGCCAATGA CGCCGCCTAT GATTCGCCGA TCGCTGTCGA TCGCGGAAAG TTCGACAAGC GGGGAGCGGA CACAAACGAC ACGGCGGCCG CGACGACGAA TGGCGTTTCC ACTGCAATGA CACCTGGCGC ATCCGACCTG TACGCAGCCG CTGTTCGTGC GGGTCTTGGC GGGCAAAATG TTGATCCTAA CGGCCAGAAG TCCAAGGAGG ACTTCTTTAA TGCCGACCTC AAGGAACTTG GCTACCTGCC AAACCGTGTC GTCCCCCAGC AGTCGCTTTA CGAACTCAAG CGCGGCTCGG TTATTCCCGC GACATTGATC ACCGGGATCA ATTCCGATCT TCCCGGTCGC ATCACCGCCC AGGTGAGCCA GAACGTCTAT GACTCAGCTA CGGGACATCG GCTCCTGATC CCGCAGGGAA CGAAACTGTT CGGCCGTTAT GACAGCAAGG TGTCGTTCGG CCAGAGCCGT GTTCTGGTCG TCTGGACCGA CATCATCTTC CCGAACGGCT CGACGCTTCA GATCGGTGGC ATGGCTGGCA CAGACGCGCA GGGCTACAGC GGTTTCCGCG ACAAGGTCGA CCGCAAGTGG CTTCAGACCT TCGGCTCGGC CATCCTCATT GCGGTAATCG GCACCGGGAT CGATATGGCT GTACCGCAGA GCTCGACGCT GGCGACGCAG GATACTGCCT CGGATGCGGC GCGGAGGAAT TTCGCGGAAA CCTTCGGCCG TGTCGCAGAC CGAACTATAC AGAGAAACAT GGACGTCCAG CCGACGCTGG AGATCCAACC TGGCTACAGG TTCAACGTCC TTGTCGATCA GGACATTGTT TTTCCAAGCG CTTACAGAAA CTAA
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Protein sequence | MVQSLKLGGT VNEETGPGMR RINRLPIIVV VVLVVAFLAV IFYGLSSRGL YFRDTGPDTS SGNPASTFAD QIKRGVSDGI IGEPQQVTTL QPTPVETQEE KRSVNPFTPQ PGQREEARPE QQLESEKVWR ARLQREQEEQ YLRERQRQRM ARLQANDAAY DSPIAVDRGK FDKRGADTND TAAATTNGVS TAMTPGASDL YAAAVRAGLG GQNVDPNGQK SKEDFFNADL KELGYLPNRV VPQQSLYELK RGSVIPATLI TGINSDLPGR ITAQVSQNVY DSATGHRLLI PQGTKLFGRY DSKVSFGQSR VLVVWTDIIF PNGSTLQIGG MAGTDAQGYS GFRDKVDRKW LQTFGSAILI AVIGTGIDMA VPQSSTLATQ DTASDAARRN FAETFGRVAD RTIQRNMDVQ PTLEIQPGYR FNVLVDQDIV FPSAYRN
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