| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_9135 |
|---|
| Symbol | |
|---|
| ID | 7367688 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011984 |
|---|
| Strand | - |
|---|
| Start bp | 102532 |
|---|
| End bp | 103074 |
|---|
| Gene Length | 543 bp |
|---|
| Protein Length | 180 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 643644335 |
|---|
| Product | transposase |
|---|
| Protein accession | YP_002542632 |
|---|
| Protein GI | 222083229 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG3316] Transposase and inactivated derivatives |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0658372 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAGACC GTGATCCACG ATATCGCCGA CATCGCTTTC CAGCTGAAAT CATTGCCCAG
GCCGTGTGGC TCTATTTCCG TTTCCCTCTG AGCCTACGAA TGGTCGAGGA CTTGCTGGCT
GCCCGCGGGA TCATTGTCTC GCACCAAACC GTCCGGCTGT GGGCGGAGAA ATTCGGCCGC
ACCTTTGCCA ACGAGATCCG TCGTCAATCA TCCGGTCGGC TTGGGGACAA GTGGCATCTC
GATGAAGCCG TTGTTTCAAT CCGCGGCAAG AAGCATTGGC TCTGGCGCGC GGTTGATCAG
GACGGTTTCG TCCTGGAGGT TCTCGTTCAA AGCCGCCGAA ATGCCAAGGC CGCCAAGCGC
CTGATGCGGA AGCTCTTGAA GGGCCAGGGA CGATCGCCGC GGGTGATGAT CACAGACAAG
CTGCGATCCT ACGGCGCAGC CAAGCGAGAG ATCATGCCGG GTGTCGAGCA TCGCTCCCAC
AAAGGGTTGA ATAATCGGGC GGAGAATTCT CACCAGCCAG TCCGGCGACG AGAGGTGGCA
TGA
|
|---|
| Protein sequence | MTDRDPRYRR HRFPAEIIAQ AVWLYFRFPL SLRMVEDLLA ARGIIVSHQT VRLWAEKFGR
TFANEIRRQS SGRLGDKWHL DEAVVSIRGK KHWLWRAVDQ DGFVLEVLVQ SRRNAKAAKR
LMRKLLKGQG RSPRVMITDK LRSYGAAKRE IMPGVEHRSH KGLNNRAENS HQPVRRREVA
|
|---|
| |