| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_9084 |
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| Symbol | agpT |
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| ID | 7367809 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011984 |
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| Strand | - |
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| Start bp | 58448 |
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| End bp | 59395 |
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| Gene Length | 948 bp |
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| Protein Length | 315 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 643644301 |
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| Product | transcriptional regulator AraC family |
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| Protein accession | YP_002542598 |
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| Protein GI | 222083195 |
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| COG category | [K] Transcription |
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| COG ID | [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGTTTTCCC AAGAAAGCTT AGTTATAATC GCAAAACTTT CGCGCAAAAA TTGTTTTTCA
TTAGCAAATA TCGTGCTAAA CAGGCTCATG ACCTCTCCTC GCGCGCTCAA AATTGATTTT
GCGGAACCGG ACTTGGCACC CGTCTCACGA CGGGCGCACC ATTCCCATGG ATTTTCAGTC
GAGTATGTGG AGCTGGGCAG CGCGGAACCG TACGAATTTA GAAGCCGTGG TGATAGCCAT
TATCTGGCAC TGCACGACAT CGCCCTTACG GACGGCGAGC TTCGCGTAGA CAGCCTGCCG
AGGCTTCATG TGCGGGATTT ACGTGACACG ATCACGTTCG TGCCCAAGGG CTGCGGCATT
GAAGGCTGGA GTAAGCCTAA ACCACGGGTC AACAGTTTTG TGGCGATGTA TTTCGATCCT
GAGGTGATCC ACCAAGATCT CGGGAGCCGA TATGCCAGAC GCGATCTACC GCCGTTCGCC
TATTCGCGCG ATCCGCAACT GCGCGCGACG CTCAAAAAAC TCGCAGCGCT CGTAAGGGCG
CCTCAAGTCG ATGAACTTCA TGCCGAGAGC GTGTGCCTGG TGGCGTCGCT CGAAGTCTTT
GGCGTCATGG CCGATAGGCA GGGGCGCCTG TCCGACCGAC AGATCGCCTC GGTGACGGAT
TTTGTGGAGG GGCATCTTCA CGAAACCATA GGATTGGCTG AGCTGGCCGC CGTCGCCGGG
CTTAGCCGTT TTCATTTCTC TCGTGCCTTC AAGGCGACAA CCGGGGAAAA TCCCCATGCG
TTCGTCCAAA GGCGGCGCAT CTCGCGAGCT GTCAAACTAC TGGAACAGGT TGAACTCCCT
ATCGACGCGA TTGCGGGGGC AGTCGGGTAC AAGGGCACAC CACAGTTTCG AAGGGCGTTT
CATGAGGTAA TGGGTACCTC TCCGCTGAAA TATCGTCTGC GACGTTAA
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| Protein sequence | MFSQESLVII AKLSRKNCFS LANIVLNRLM TSPRALKIDF AEPDLAPVSR RAHHSHGFSV
EYVELGSAEP YEFRSRGDSH YLALHDIALT DGELRVDSLP RLHVRDLRDT ITFVPKGCGI
EGWSKPKPRV NSFVAMYFDP EVIHQDLGSR YARRDLPPFA YSRDPQLRAT LKKLAALVRA
PQVDELHAES VCLVASLEVF GVMADRQGRL SDRQIASVTD FVEGHLHETI GLAELAAVAG
LSRFHFSRAF KATTGENPHA FVQRRRISRA VKLLEQVELP IDAIAGAVGY KGTPQFRRAF
HEVMGTSPLK YRLRR
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