| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_8335 |
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| Symbol | traI |
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| ID | 7365283 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011982 |
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| Strand | - |
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| Start bp | 257871 |
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| End bp | 258509 |
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| Gene Length | 639 bp |
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| Protein Length | 212 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 643641888 |
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| Product | putative autoinducer synthesis protein |
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| Protein accession | YP_002540185 |
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| Protein GI | 222080321 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG3916] N-acyl-L-homoserine lactone synthetase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.613519 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCTGATTC TGACCGTCTC GCCCGGCCAA TATGAACACC AGACCACTTA CCTGAAGCAA
ATGCACCGGC TTCGTGCCGA AGTGTTCGGA AACCGTCTGG AATGGGATGT CGCAATCGAG
GACGGCGGCG AACGGGATCA GTACGACGCC CTCAGCCCTA CCTATATCCT CGCGACGCTC
AGTGGGCAGA GGGTGGTCGG CTGCGCGCGG CTCTTACCCG CATCAGGCCC GACCATGCTG
GAGCGGACGT TCCCGCAATT GCTGGCAGCC GGCTCTCTCA GCGCTACCAC GGCAATGGTC
GAAAGCTCAC GCTTCTGCGT CGAGACGACA TTGCCGACGA GGAGGGCAGG AGGCCAACTG
CATCTCGCAA CGCTCACCAT GTTTGCCGGC ATCATCGAAT GGTCAATGGC AAACGGCTAC
GACGAGATCG TCACCGCAAC CGATCTTCGC TTCGAGCGCA TCCTGAAGCG CGCCGGTTGG
CCGATGACAC GACTGGGCGA ACCCGTCGTG ATCGGCAACA CCGTCGCCGT CGCCGGACAT
TTGCCCGCCG ACCGAATGAG CTTCGAACGG GTCTGCCCGC CGGAATACCG TTCGATTATC
GCCGACGACA ACGGCCGCCC GTTCAGGAGC GCCGCGTGA
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| Protein sequence | MLILTVSPGQ YEHQTTYLKQ MHRLRAEVFG NRLEWDVAIE DGGERDQYDA LSPTYILATL
SGQRVVGCAR LLPASGPTML ERTFPQLLAA GSLSATTAMV ESSRFCVETT LPTRRAGGQL
HLATLTMFAG IIEWSMANGY DEIVTATDLR FERILKRAGW PMTRLGEPVV IGNTVAVAGH
LPADRMSFER VCPPEYRSII ADDNGRPFRS AA
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