Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_8325 |
Symbol | trbG |
ID | 7365274 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011982 |
Strand | - |
Start bp | 250013 |
End bp | 250867 |
Gene Length | 855 bp |
Protein Length | 284 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 643641879 |
Product | conjugal transfer protein TrbG |
Protein accession | YP_002540176 |
Protein GI | 222080312 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3504] Type IV secretory pathway, VirB9 components |
TIGRFAM ID | [TIGR02775] P-type conjugative transfer protein TrbG |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.000831167 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATATCA GACACAGAAG ACAACGGGCT ACGCTGGCCA TCGGCCTCTT GGTTTTTGCG ATCGTCCCCT TGACCGTCCT CGACCCCCGG ACTGTGCTTG CCGCTGATGG TGTCACCGCC AACGAGGCGA AAGGCATGGG GCTCTCGACC CAATGGCGCG GGTCGAAAGG CCTGGTCACC AAGGGCGCGG ACGGTAAGGT GATCTTTCTC TATGGCGAGG TTCAGCCATC GGTCGTCTGC TCACCGCTGC AGGTCTGCGA TATCGAACTT CAGGGCGGCG AGGTAGTGCG CGATGTGCTG GTCGGCGATA CGGTCCGCTG GAAAGTGGAG CCGGCGACAT CGGGCGCGGC CGGGGGCCAG GCCATCCATC TTATCGTCAA GCCATCCGAA CCGGGACTTG TCACCTCGAT GGTGGTGACC ACATCCCGGC GGACATATCA TATCCAGCTC AAGTCGCATC CCACGCAATA TATGGCCCGC GTCGGCTTCG AATACCCCGA GGATGTTTCC ACGAAACTCG CCGACGTCAA CGCGCGGCTT GAAGCCAGTA CGATCCCCGG CGCCGGGGTG CCGGCGGAGC AGCTGAGCTT TTCCTATTCC ATATCAGGCA GCGCCGGTTG GCGGCCGACA CGGGTCTATT CCGATGGCCT GAAAACCTAC ATCCAGTTCC CGCGGTCGAT CTCGGGTCAG GATGCGCCGG TTCTCTTCGT CGTCTCCGGT GGCCAGAACC GTATCGTCAA CTACCGCATG AAGAGCAATA TGATGGTGGC CGATTACAAC ATCGATCGCG CTGTGCTCGT CTCAGGCGTC GGCTGGAAAC AACAAAAGGT AACGATCACC AGGGGAGGGC GGTGA
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Protein sequence | MNIRHRRQRA TLAIGLLVFA IVPLTVLDPR TVLAADGVTA NEAKGMGLST QWRGSKGLVT KGADGKVIFL YGEVQPSVVC SPLQVCDIEL QGGEVVRDVL VGDTVRWKVE PATSGAAGGQ AIHLIVKPSE PGLVTSMVVT TSRRTYHIQL KSHPTQYMAR VGFEYPEDVS TKLADVNARL EASTIPGAGV PAEQLSFSYS ISGSAGWRPT RVYSDGLKTY IQFPRSISGQ DAPVLFVVSG GQNRIVNYRM KSNMMVADYN IDRAVLVSGV GWKQQKVTIT RGGR
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