| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_8323 |
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| Symbol | trbI |
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| ID | 7365272 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011982 |
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| Strand | - |
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| Start bp | 248211 |
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| End bp | 249524 |
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| Gene Length | 1314 bp |
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| Protein Length | 437 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 643641877 |
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| Product | conjugal transfer protein TrbI |
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| Protein accession | YP_002540174 |
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| Protein GI | 222080310 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2948] Type IV secretory pathway, VirB10 components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.294198 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTACAAT CCCTCAAACT CGGCGGCGCG CAAAACAGTC AAGCGGCATC GGGGATCCGG
CGGATCAATC GCCTGCCGAT CGTCGTCGTT ATCGTGCTGG CAGTCGCCTT CCTTGGCATC
ATCTTCTATG GGCTTGCCTC GCGTGGGCTT TATTTCGGGA GGGATAAAGG CCCGGAGACC
AGTTCCGGCG ATCCTGCCTC AACTTTTGCC GATCAGATCA AGCGCGGTGT CACCGACGGT
ATTATCGGCG AACCGCAGCA GCAGACAACG TTTCAGCCGA CTCCGGTCGA AACAAAACAG
GTTGAGGAGA AAGCGGCCAA CCCCTTCACT CAGCAACCGG CACAGAGACA GGAGCAACGG
CGCGGGCAGG AACTGGAACC GGAGGAGGTC TGGCGGGCAC GGCTTGCCCG TGAACAACAA
GAGCAGATTC TCCGCGAGCA ACAGCGCCAG CGGATGGCCC GGATGCAGGC CCGGGACACG
GCATATGACG CCCCGCTTGC CATCGACCGC GGCAAACTGG AAGCGCGATC AACAACAGAT
GACGCGACTG CGGGCAGAAC ATCCACTGCA ACGGCAACAA CCTCGGCAAA CCCTTCGGAC
CTCTATTCGG CCGCGCTGCG CGCTGGCCTT GACGGCCAAA ACGTCGATCC GAATGGACAG
CGACCCAAGG AAGACTTTTT CAATGCCGAT CTCAAGGATC TCGGTTACCT GTCGAACCGC
GTCGTGCCAC AGCAATCGGC ATTCGAATTG AAGCGCGGCT CCGTCATTCC TGCGACACTC
ACTACAGGGA TCAATTCCGA TCTTCCCGGA CGCATCACCG CCCAGGTGAG CCAGAACGTC
TATGACAGCG CGACCGGACA TCGCCTGCTG ATCCCGCAAG GGACGAAACT GTTCGGCCGT
TACGACAGCA AGGTATCGTT CGGCCAGAGC CGCGTGCTCG TCGTCTGGTC CGACATCATC
TTCCCGAACG GCTCGACACT GCAGATCGGT GGCATGGCCG GGACGGATGC CGAAGGTTAT
GGCGGGTTCA GGGACAAGGT GAACAACCAC TACCTTAAAA CATTTGGCTC GGCTGTACTG
ATTGCCCTGA TCGGGACCGG CATCGATATG GCAGTACCGG AGAGTTCGAC GCTAGCAACA
CAGGACACGG CCTCGGATGC AGCCCGGCGG AATTTTGCCG AGACCTTTGG GAGAGTCGCC
GACCGGACGA TTCAGCGCAA CATGGACGTG CAGCCAACGC TCGAAATTCG GCCCGGCTAC
AAGTTCAATG TGCTCGTCGA TCAGGACATA ATCTTCCCGG GCAGCTATCG ATGA
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| Protein sequence | MVQSLKLGGA QNSQAASGIR RINRLPIVVV IVLAVAFLGI IFYGLASRGL YFGRDKGPET
SSGDPASTFA DQIKRGVTDG IIGEPQQQTT FQPTPVETKQ VEEKAANPFT QQPAQRQEQR
RGQELEPEEV WRARLAREQQ EQILREQQRQ RMARMQARDT AYDAPLAIDR GKLEARSTTD
DATAGRTSTA TATTSANPSD LYSAALRAGL DGQNVDPNGQ RPKEDFFNAD LKDLGYLSNR
VVPQQSAFEL KRGSVIPATL TTGINSDLPG RITAQVSQNV YDSATGHRLL IPQGTKLFGR
YDSKVSFGQS RVLVVWSDII FPNGSTLQIG GMAGTDAEGY GGFRDKVNNH YLKTFGSAVL
IALIGTGIDM AVPESSTLAT QDTASDAARR NFAETFGRVA DRTIQRNMDV QPTLEIRPGY
KFNVLVDQDI IFPGSYR
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