| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_8219 |
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| Symbol | virB10 |
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| ID | 7365109 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011982 |
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| Strand | - |
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| Start bp | 160909 |
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| End bp | 162030 |
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| Gene Length | 1122 bp |
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| Protein Length | 373 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 643641806 |
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| Product | type IV secretion system protein VirB10 |
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| Protein accession | YP_002540103 |
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| Protein GI | 222080240 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2948] Type IV secretory pathway, VirB10 components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAGGAGG TGAGTGCCCA ATCCAGAGAG GGTATCGACG CCCCCGGATC CCTCGTTACC
GATCTTCACG GCCGGCGCCT TTCAGGATCG CAAAAGCTCC TTGTTGCTGG CTTGGTTCTG
GTACTGTCGT TGGGCCTTAT TTGGCTTGGT GCGCGTCCAA AGAAAAAGAC CGAGCCGTCA
CCACCAAATA CAGTGATTGA TGCCAACACG AAGCCCTTTC GTCCGGCCCC GATTGATATT
CCCACAACGC CCCCGCCAAC TTCAGAAGCA ACGGTCTTGC CGTCGGATCA ACATCAGCGA
GAACACAACG AACTGAGGCC CGAAGAAACA CCGATCTTTG CTTACAGCGG AGGTACTCAG
AATGGCGTCA AATCTGTGGC GAATGCTGAA ATCAAGAACG GCGACGACGA CGATAGAAAC
CCCGACTCCC TAGCAGTGTC TGAGCATTCG GCTGAAAACG ATCTTTCGGC CCGCTTGAAA
CCGACAGTGG TGCAGCCTAG TCTCGCTACA CTTTTGCCGC ACCCAGATTT CACTGTTACG
CAAGGAACGA TCATTCCCTG CATACTGCAA ACCGCCATTG ATACACATCT CGCGGGGTAT
GTGAAATGTG TATTGCCACA AGACATACGC GGAGCAACCG GAAATGTTGT ACTTCTGGAT
CGTGGAACGA CCGTCGTCGG TGAGATCCAG CGTGGACTGC AGCAGGGAGA TGCCCGCGTT
TTCGTTCTCT GGAATCGCGC GGAGACGCCC TCACACGCCG TCGTCTCTCT TTCGTCTCCG
GGGGCCGACG AACTCGGCCG TTCCGGACTG CGCGGTACGG TCGACAATCA TTTCTGGAAA
CGCTTCAGCG GGGCAATGCT ACTGAGTGTC GTTCAGGGCG CAGTCCAGGC GGCAAGTAGC
TACGCAGGGA ATTCGGCCGG CGGGACCAGC TTCAATAGCT TCCAAAACAA CGGCGAACAA
GCGGCCGATA CGGCCTTGAG AGCGACCATA AACATTCCCC CAACCCTGAC AAAAAATCAG
GGTGACACGG TCTCTATCTT CGTCGCGCGG GATTTGGATT TCTCAGGAAT TTACCAGCTT
TATGTGACTG GTGGATCGGT GAAACGCCGG CGTCTGCCCT AA
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| Protein sequence | MEEVSAQSRE GIDAPGSLVT DLHGRRLSGS QKLLVAGLVL VLSLGLIWLG ARPKKKTEPS
PPNTVIDANT KPFRPAPIDI PTTPPPTSEA TVLPSDQHQR EHNELRPEET PIFAYSGGTQ
NGVKSVANAE IKNGDDDDRN PDSLAVSEHS AENDLSARLK PTVVQPSLAT LLPHPDFTVT
QGTIIPCILQ TAIDTHLAGY VKCVLPQDIR GATGNVVLLD RGTTVVGEIQ RGLQQGDARV
FVLWNRAETP SHAVVSLSSP GADELGRSGL RGTVDNHFWK RFSGAMLLSV VQGAVQAASS
YAGNSAGGTS FNSFQNNGEQ AADTALRATI NIPPTLTKNQ GDTVSIFVAR DLDFSGIYQL
YVTGGSVKRR RLP
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