| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_8212 |
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| Symbol | virD2 |
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| ID | 7365103 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011982 |
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| Strand | - |
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| Start bp | 155516 |
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| End bp | 156727 |
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| Gene Length | 1212 bp |
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| Protein Length | 403 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 643641800 |
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| Product | type IV secretion system T-DNA border endonuclease VirD2 |
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| Protein accession | YP_002540097 |
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| Protein GI | 222080234 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3843] Type IV secretory pathway, VirD2 components (relaxase) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCCGATC GATCTCAAGT CATCATCCGC ATTGTGCCAG GAGGTGGGAC GAAGACCCTC
CAACAAATTA TTAATCAATT GGAATATCTG TCCCGGAAGG GCACCTTGGA GCTGCAGCGT
TCAGCACGGC ATCTCGATAT TTTCGTACCA CCGGATAATA TCCGCGATCT CGCCCGAAGT
TGGATTCAAG AAACCGGGAC CTACGACGAA AGTCAGCCCG ACGAGGAAAG GCAAAAGGAA
TTGACCACCC ATATTATTGT AAGCTTCCCT GCTGGTACAA GTCAGCCAGC GGCTTATGCA
GCGAGCCGCG AGTGGGCAGC CGAGACGTTC GGGTCAGGCG AAGGGGGAGG TCAATACAAC
TATCTTACGG CCTTCCACAC TGATCGCGAT CACCCACATT TGCATGTCGT CGTTAATCGT
CGCGAACTCT TGGGACACAA GTGGCTGAAA ATATCCCGGC GCCACCCTCA ACTGAATTAC
GATGCCCTGC GCACTAGAAT GGCCAAGGTT TCGTTTCGTC ATGGCATCGT CCTGGAAGCG
ACCAGGCGAG CTGAGCGCGG CATCACCGAG CGGCCAATGA CTTTTGCCCA GTATAGGCGC
CTTGAGCGGC AGCAGGCCAA TCAAATTCGT TTCGACGATC CTGATTTCGA ACATTTCACG
CCCGGCGAAA ACGATCGCGA ACCGGAACAA TTCTTCGATT CGTCGTACGG TGAGCGACCG
CAAAACCTGC CAGAAAGTCC GGAACGAAAC GAGCATCTGC AACCGATGTC CGAAGGGCGT
TCCCGGGCAC GAATCGGATC GAACGGCGAT GGCCGGGATG TTGAAGGCGC TTCCGGTACT
GGTTTGGCGA TCGAATCCGT CACGCACCCA ACAAGCGAGG ACGACGTTCA GCAACGACTT
CATCGAAAAC GCCCTCGTGG TGATGAGGAT GAGGACAGAG GCGCAAAACT GACTAGGGTA
AACAGAGTTC GGGCGGGAGT GGCAATCACG GACGTACCGG TTACCGGGGA CGGTCCGACA
TCGTCAATAC AGGCTCCTGG ATCAAACCCG TCGCAGACCG ACATCGCTAC GGATGGATTG
CCTGCCACAG CCGATCGCCC GCAGCAGGGG GGCCCAAATT CTAAGCGTCC CCGTGATGAG
GAAGCCGAGC CGAGCATTCG CAAGCGTTCA AGGGACGGAC GCAGCCAAGA AGATGAGGGA
AATAGAAGAT AG
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| Protein sequence | MPDRSQVIIR IVPGGGTKTL QQIINQLEYL SRKGTLELQR SARHLDIFVP PDNIRDLARS
WIQETGTYDE SQPDEERQKE LTTHIIVSFP AGTSQPAAYA ASREWAAETF GSGEGGGQYN
YLTAFHTDRD HPHLHVVVNR RELLGHKWLK ISRRHPQLNY DALRTRMAKV SFRHGIVLEA
TRRAERGITE RPMTFAQYRR LERQQANQIR FDDPDFEHFT PGENDREPEQ FFDSSYGERP
QNLPESPERN EHLQPMSEGR SRARIGSNGD GRDVEGASGT GLAIESVTHP TSEDDVQQRL
HRKRPRGDED EDRGAKLTRV NRVRAGVAIT DVPVTGDGPT SSIQAPGSNP SQTDIATDGL
PATADRPQQG GPNSKRPRDE EAEPSIRKRS RDGRSQEDEG NRR
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