| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_8210 |
|---|
| Symbol | virD4 |
|---|
| ID | 7365101 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011982 |
|---|
| Strand | - |
|---|
| Start bp | 150781 |
|---|
| End bp | 152772 |
|---|
| Gene Length | 1992 bp |
|---|
| Protein Length | 663 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 643641798 |
|---|
| Product | type IV secretion system protein VirD4 |
|---|
| Protein accession | YP_002540095 |
|---|
| Protein GI | 222080232 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.493038 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGATGAATT CAGGCAAGTA CACGCCAATA GGCCTAGCTG CGATCATTGC ATGTTCACTG
GCCGTTGGTT TTTGTGCAGC AAGTCTCTAT GTCACATTTC GCCATGGATT TACGGGCGAA
AAGATGATGA CTTTCAGCGT TTTTACGTTC CTGTACGAGA CACCACCTTA CTTGGGGTAC
GCAAGCCCTA CGTTCTACCG CGGACTTGCC ATCATCGTGG TGACGTCGAC AGTTGTGTTG
CTAGGCCAAC TGTTGTTATC GATGCGCGAT CGCCAACATC ACGGCACCGC TCGCTGGGCC
GGTTCAAGCG AGATGCGGCA CGCCAAATAC CTCCAGCGCT ACAGTCACGT CACGGGTCCC
ATATTCGGCA AAACATGCGG ACCGCGCTGG TTCGGTAGCT ACCTGAGTAA TGGAGAACAA
CCTCACAGTC TTGTTGTTGC CCCAACCCGC GCTGGTAAGG GCGTAGGCGT CGTTATCCCG
ACGTTGCTAA CCTTTAAGGG CTCAGTAATC GCTTTGGATG TGAAAGGCGA GCTATTTGAA
CTCACATCGA GGGCGCGCAG ATCAAGCGGC GACGCCGTTT TCAAGTTCTC GCCCCTAGAT
CCAGAGCGGC GAACCCACTG TTACAACCCC GTGCTTGATA TTGCCGCGTT GCCGGCCGAA
CGGCGCTTTA CAGAAACGCG TCGCCTTGCT GCGAATCTCA TCACAGCCAA AGGAAAGGGA
GCGGAGGGTT TCATCGACGG CGCACGGGAT CTTTTCGTAG CAGGCATATT GAGTTGTATT
GAGCGCGGCA CACCAACGAT CGGCGCGGTT TACGACCTGT TCGCTCAGCC GGGCGAAAAA
TACAAGCTAT TTGCGCAACT GGCGGAGGAA ACACAAAACA AAGAGGCTCA GCGAATCTTC
GACAATATGG CCGGAAATGA CACCAAAATA CTGACGTCCT ACACATCGGT GCTCGGCGAC
GGCGGCCTCA ATCTTTGGGC CGATCCACTC GTTAAGGCGG CTACAAGCCG CTCGGATTTT
TCCGTCTACG ATTTGCGGCG GAAAAAGACT TGCATTTATC TTTGTGTCAG CCCGAATGAT
CTCGAAGTCG TAGCGCCGTT GATGCGTCTT CTCTTCCAGC AGGTTGTATC AATCCTGCAG
CGATCGCTGC CCCTTGGGGA TGAACGGCAC GATGTTCTAT TTCTCCTCGA TGAGTTCAAG
CACCTGGGCA AGCTGGAAGC CGTAGAGACG GCGATTACTA CGATCGCCGG CTACAAGGGC
CGCTTCATGT TCATCATACA GAGCCTGTCG GCTTTGACCG GAACCTATGA TGAAGCTGGT
AAGCAAAATT TCCTCAGCAA TACTGGTGTG CAGGTATTCA TGGCGACCGC TGATGACGAG
ACGCCAACCT ACATTTCTAA AGCTATCGGC GACTACACGT TCCAAGCTCG CTCGACTTCG
TACAGCCAAG CGCGCATGTT TGATCACAAC ATCCAAATCT CCGAACAAGG AGCGCCGCTT
CTGCGTGCCG AACAGGTCCG CCTACTCGAC GATGACCATG AAATAGTCCT TATCAAGGGC
CAACCTCCCC TTAAACTGCG AAAAGTGCGA TATTATTCGG ATCTCATATT GAAGCGGCTC
TTCGAAAGCC AACAGGGTTC CCTTCCCGAG CCCGCATCTT TGAGGCTGCC GGAAGATACG
AACATCTTCG AAGGCAAGCT TGACCAGAAA GCAGTCGATC CAATATCGCA AAAACCGGTG
CAGATTGAAG AGAGCGACTA CGGGAAAGTC GTTACCCCCG TAAGCAGACC TGTGGCCGAG
GGAGAGCACA GCGCGGTGAT AGAAGTTCGC ACCGGTTCAA ACGAAGTTGA TGACAAACAT
GAATACAGGG GCGCGGACGC CGCAACCTCC GAGGAGCTTC TGGACATTGC TCCAGCTCTT
CTGGCGCAAC GCGAACTCCT TGAACAGATC ATTTCTCTCC AGCAACGAGG TGGAACAGAT
TCCGGCACTT GA
|
|---|
| Protein sequence | MMNSGKYTPI GLAAIIACSL AVGFCAASLY VTFRHGFTGE KMMTFSVFTF LYETPPYLGY
ASPTFYRGLA IIVVTSTVVL LGQLLLSMRD RQHHGTARWA GSSEMRHAKY LQRYSHVTGP
IFGKTCGPRW FGSYLSNGEQ PHSLVVAPTR AGKGVGVVIP TLLTFKGSVI ALDVKGELFE
LTSRARRSSG DAVFKFSPLD PERRTHCYNP VLDIAALPAE RRFTETRRLA ANLITAKGKG
AEGFIDGARD LFVAGILSCI ERGTPTIGAV YDLFAQPGEK YKLFAQLAEE TQNKEAQRIF
DNMAGNDTKI LTSYTSVLGD GGLNLWADPL VKAATSRSDF SVYDLRRKKT CIYLCVSPND
LEVVAPLMRL LFQQVVSILQ RSLPLGDERH DVLFLLDEFK HLGKLEAVET AITTIAGYKG
RFMFIIQSLS ALTGTYDEAG KQNFLSNTGV QVFMATADDE TPTYISKAIG DYTFQARSTS
YSQARMFDHN IQISEQGAPL LRAEQVRLLD DDHEIVLIKG QPPLKLRKVR YYSDLILKRL
FESQQGSLPE PASLRLPEDT NIFEGKLDQK AVDPISQKPV QIEESDYGKV VTPVSRPVAE
GEHSAVIEVR TGSNEVDDKH EYRGADAATS EELLDIAPAL LAQRELLEQI ISLQQRGGTD
SGT
|
|---|
| |