| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_8146 |
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| Symbol | |
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| ID | 7365061 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011982 |
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| Strand | + |
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| Start bp | 98782 |
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| End bp | 99897 |
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| Gene Length | 1116 bp |
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| Protein Length | 371 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 643641763 |
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| Product | spermidine/putrescine binding protein of ABC transporter |
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| Protein accession | YP_002540060 |
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| Protein GI | 222080197 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00458388 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCTGAGA ATAAAGGCAC AATGGAAGCG CGTATCAGCC GCCGTAATTT CAATCTTCTC
GGATTGGGGT CGGCCGCTGC GCTTGTTGCA ATGCGTGCGG GTCCGAGCTG GGCTGCCGGC
GAGAAGATAA CTTTTTACGG CTACGGCGGC CAGAGCAAGA AGAACATGCA TGAAGTCGTC
TTCACGCCCT TCACCCAGGC CACCGGCATT GAGGTGGTTG AAGGTACGTT CGGCGACGAA
ACCGAAATCA TCACTCGCCT GAAATCCGGT GGTGCTGGGG ATCTCAGCGT CTACTCAAAT
GCTGGCTTCG ATATGTACAA GCGCTACGTG GACCTAGGAG CCAACTCTGA GCTCAATGAA
GACAACATTC CGAACCTGAA GCTTGTTTCT CAGGTGCTGA TCGAGCAGAT GCGCAAGCTA
ACTCCAAATG GTAAGCTCTC AGCGATTCCC TACCTCTACG GTACCACCGG CATCGCCTAC
AACACAAAAC ACGTATCGCG CGAGGAGGCT AAAAAACTTG GCTACAAGCT CCTTTGGGAC
AAGCGTTTCT CCGGCAAGAT CGCGTTGAGC AACTACGCTC TCGACCGCAT CTGGTCGGCG
GCGCTTTATA CGGGCCAAGA CCCGAACAAG CTCAGCGACA CCAATGCTAT TTTCGCGGCT
CTTCGTGAAC AGAGGCCGCT CGTCAAGAAA TATTGGGAGT CCGGCTCGGA AGTTATGGAC
CTTCTCGCCA AGGAAGAGGT TGTGGTCGCC GAGACTTGGT CGACGCGGGC GGCGGCGCTG
AAGAAAGACA ACTATCCAAT CGAATATCTC GAACCCGAAC AATGCCAGGC TTGGGTCCAG
AACTTGTTCG TCCTGAAAGG CGCACCGATG GAGCCTTGCG AAAAGCTCCT CGATCTCATG
CTCAAGCCGG AGATCAACTT CGAATATTGC ATGCGCACCA ATAACGGCTC CGCGCTTGAT
CCGAGAAAGA CGAACTTCCC GGATCAGCTG AAGAACCAGC CCGGCTTCGA TCCCAGCGGA
ACGTTCGAGG GCTTTAATAT CCCCGACGGA GCTTACTGGG CGGAACAGAT CGACAAGCTT
GAGCCACAGT GGCGGCGTGT TGCCAGGGGT GCATGA
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| Protein sequence | MSENKGTMEA RISRRNFNLL GLGSAAALVA MRAGPSWAAG EKITFYGYGG QSKKNMHEVV
FTPFTQATGI EVVEGTFGDE TEIITRLKSG GAGDLSVYSN AGFDMYKRYV DLGANSELNE
DNIPNLKLVS QVLIEQMRKL TPNGKLSAIP YLYGTTGIAY NTKHVSREEA KKLGYKLLWD
KRFSGKIALS NYALDRIWSA ALYTGQDPNK LSDTNAIFAA LREQRPLVKK YWESGSEVMD
LLAKEEVVVA ETWSTRAAAL KKDNYPIEYL EPEQCQAWVQ NLFVLKGAPM EPCEKLLDLM
LKPEINFEYC MRTNNGSALD PRKTNFPDQL KNQPGFDPSG TFEGFNIPDG AYWAEQIDKL
EPQWRRVARG A
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