Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_8017 |
Symbol | ligD |
ID | 7365147 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011982 |
Strand | - |
Start bp | 15594 |
End bp | 18275 |
Gene Length | 2682 bp |
Protein Length | 893 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 643641699 |
Product | ATP-dependent DNA ligase |
Protein accession | YP_002539996 |
Protein GI | 222080133 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1793] ATP-dependent DNA ligase [COG3285] Predicted eukaryotic-type DNA primase |
TIGRFAM ID | [TIGR02776] DNA ligase D [TIGR02777] DNA ligase D, 3'-phosphoesterase domain [TIGR02778] DNA polymerase LigD, polymerase domain [TIGR02779] DNA polymerase LigD, ligase domain |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCCGATA ATCTCTCGAA ATACCGCGAG AAACGCGACT TCAAGAAAAC CGCCGAGCCC AGCGGTGAAG TCGGGGTGAA GTCATCGAAC CGCCGTCGCT TCGTCATCCA GAAGCACGAC GCTACACGGC TCCATTACGA TCTTCGGATC GAGATGGATG GTGTTTTCAA ATCCTGGGCG GTCACCAAAG GTCCATCACT CGATCCACAT GACAAGAGAT TGGCGGTCGA GGTCGAAGAT CACCCGCTCG ACTATGGCGA CTTCGAAGGC ACCATCCCCA AGGGTCAATA CGGTGGCGGA ACCGTCATGC TCTGGGACCG GGGATATTGG GAACCCGAGG GAAACAAAAC GGCGGAACAA GCCCTGGCCA AGGGCGATTT CAAATTCACG CTCGAAGGCG AGCGCCTGCA CGGTAGTTTT GTGCTCGTCC GGATGCGCGG ACGCGAGGGC GAGAAGCGCA CCAATTGGCT CCTGATTAAG CACCACGACG ACCATGCGGT TGAGGAGAAC GGCGCAGCCA TCCTGGAGGA GAACGACACC TCCGTTGCGT CCGGTCGCAC GATGGAGGCG ATCGCGTCGG GAAAGGGCCG CAAGCCGAAA CCTTTCATGA CGCAGGGCTC CGTCGTCGAG GCTGATGCTG TCTGGGATAG CACCGAGGGC CTGGCCGCCG ACGAGCGAAA GGCCGGAACG AAGACGAAGG CAAAGCCGAC CAAGAAAGCC GCCGCTGCTG CAAAGCAGCC GAACACCGGT ATGCCGGAAT TCGTGCCACC GCAGCTTTGC GAAACGTTCT CCCGCCCGCC TTCTGCCGAG GGATGGATCC ACGAAGTCAA GTTCGATGGC TACCGGATCC AGATGCGGGT GGTGGATGGC AATGTCACCC TGAAAACCCG CAAAGGCCTG GACTGGACTG CGAAATGGCC CGCTATCGCC AAGGCTGCCT CGTCACTTCC CGATTGTATT ATCGACGGAG AGATCTGCGC TCTCGACAAT CATGGTGCGC CGGACTTCGC CGCCCTTCAG GCAGCACTTT CGGAAGAAAA GACCGATGAC CTCGTCTTCT TCGGTTTCGA TCTGCTATTC GAAGGTGAGG AAGATCTCCG CGAAGCTCCG CTCACCGAGC GCAAAGAACG ATTGTCGGCA ATGCTGTCCG ATGCGGGTGA CGATCCGCGT CTGAGGTTCG TCGAGCATTT CGAGACAGGC GGAGACGCCG TGCTGAAGTC GGCGTGCCGA CTTTCGCTGG AAGGCATCGT GTCGAAAAAG GGCGATGCAC CATACCAATC CGGCCGGAGT GACACCTGGA CGAAATCCAA GTGCCGGGCC GGGCACGAGG TGGTCATCGG AGCCTATGCC ACGACCAACG GTGCCTTCCG ATCGCTGCTG GTCGGTGTCT ATCGGGGCGA CCATTTCGTC TATGTCGGAC GGGTGGGAAC GGGCTATGGA GCGAAGGTCG TCGACCAGAT CCTACCGAAG CTTCAAGCGT TGGAAGCGTC GAAATCGCCG TTCACCGGAA TAGGCGCCCC AAAAAAAGCC GCCGAGATCG TATGGCTGAA GCCGGAACTG GTAGCCGAGA TCGAATTCGC CGGCTGGACG GCTGATGGGC AAGTGCGCCA GGCTGCGTTC AAGGGGCTGC GAGAGGATAA GCCCGCAAAA GAAGTCGAGG CCGAGAAGCC GGCAGAACCT GCCGAAGTCG ATACGCCCGA CCCGGAAACT GCTCGCAAGC CGGCCCCGAC GCCGACGACA TCTTCCCGTC TTCGCAAGGG TGCAAAGGTC GACGTCATGG GCGTCCTGGT CTCCAGCCCG GACAAGGAGT TGTGGCCTGA CGCACTTGAT GGCGAACCCG TAACGAAAGT GGACCTCGCT CACTATTATG AGGCAGTCGG GCCTTGGCTC ATCGATCATA TCAAGGGCCG GCCGTGCTCA ATCATTCGCA CGCCTGACGG TATTGGCGGG GAGCAGTTCT TCCAAAGGCA TGCGATGCAG GGGACATCAA ACCTGATCGA ACAGGTGAAA GTCTCAGGCG ACAAGCAGCC GTACCTCCAG ATCGGCCGCG TCGAGGGTTT GGCCGCGATC GCACAGATCG GCGGCGCCGA GCTACATCCG TGGAACTGCG AACCCTATCA GCCTGAAGTC CCCGGTCGTC TCGTCTTCGA TCTGGACCCA GGCCCGGATG TCGACTTCGC GACAGTGGTA GAAGGTGCAC GAGAAATCAG GGATCGGCTT GAAGAGCTGG GTCTGGTCAG CTTCTGCAAG ACGACGGGCG GCAAAGGGCT CCATGTTGTA ACGCCGCTCG CTGTTCCGAA GGGCAAGAAG CTGAGCTGGG ACGAAGGCAA GGCTTTCGCG CACGACGTGT GTCTGCAGAT GGCCCGCGAC AATCCCGAGC TTTACCTGAC CAAGATGTCC AAGGCGCAGC GTGAAGGCCG TATCTTCCTG GATTATCTGA GAAACGACCG CACCTCGACG GCGGTGGCTC CCCTGTCGCC CCGTGCCCGG CCGGGAGCAA CCGTCTCGAT GCCCTTGAAC TGGGCTCAAG TAAAAAAAGG TCTCGATCCG AAGCGGTTCA CAATTCGCAC GGTGCCTGGA CTTCTGAAGG ATAATACGGC GTGGCAGGAC TATTGCGATG GTCAAAGGCC GCTAGAGCAG GCGATCAAGC GCTTGGAGAA ACTTATGAGG CGGGCTGCGT GA
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Protein sequence | MPDNLSKYRE KRDFKKTAEP SGEVGVKSSN RRRFVIQKHD ATRLHYDLRI EMDGVFKSWA VTKGPSLDPH DKRLAVEVED HPLDYGDFEG TIPKGQYGGG TVMLWDRGYW EPEGNKTAEQ ALAKGDFKFT LEGERLHGSF VLVRMRGREG EKRTNWLLIK HHDDHAVEEN GAAILEENDT SVASGRTMEA IASGKGRKPK PFMTQGSVVE ADAVWDSTEG LAADERKAGT KTKAKPTKKA AAAAKQPNTG MPEFVPPQLC ETFSRPPSAE GWIHEVKFDG YRIQMRVVDG NVTLKTRKGL DWTAKWPAIA KAASSLPDCI IDGEICALDN HGAPDFAALQ AALSEEKTDD LVFFGFDLLF EGEEDLREAP LTERKERLSA MLSDAGDDPR LRFVEHFETG GDAVLKSACR LSLEGIVSKK GDAPYQSGRS DTWTKSKCRA GHEVVIGAYA TTNGAFRSLL VGVYRGDHFV YVGRVGTGYG AKVVDQILPK LQALEASKSP FTGIGAPKKA AEIVWLKPEL VAEIEFAGWT ADGQVRQAAF KGLREDKPAK EVEAEKPAEP AEVDTPDPET ARKPAPTPTT SSRLRKGAKV DVMGVLVSSP DKELWPDALD GEPVTKVDLA HYYEAVGPWL IDHIKGRPCS IIRTPDGIGG EQFFQRHAMQ GTSNLIEQVK VSGDKQPYLQ IGRVEGLAAI AQIGGAELHP WNCEPYQPEV PGRLVFDLDP GPDVDFATVV EGAREIRDRL EELGLVSFCK TTGGKGLHVV TPLAVPKGKK LSWDEGKAFA HDVCLQMARD NPELYLTKMS KAQREGRIFL DYLRNDRTST AVAPLSPRAR PGATVSMPLN WAQVKKGLDP KRFTIRTVPG LLKDNTAWQD YCDGQRPLEQ AIKRLEKLMR RAA
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