| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_7614 |
|---|
| Symbol | nikB |
|---|
| ID | 7380266 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011981 |
|---|
| Strand | + |
|---|
| Start bp | 554994 |
|---|
| End bp | 555938 |
|---|
| Gene Length | 945 bp |
|---|
| Protein Length | 314 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 643641618 |
|---|
| Product | nickel transporter permease NikB |
|---|
| Protein accession | YP_002539915 |
|---|
| Protein GI | 222102876 |
|---|
| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
|---|
| TIGRFAM ID | [TIGR02789] nickel ABC transporter, permease subunit NikB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGCGCGT TTATCCTGCG GCGCATTTTG CTGCTGATCC CAATGCTGCT TGGCGCATCA
CTGGTGATAT TTCTCATGCT GCGGCTTGGT CCGAGCGATC CGGCCATGGA TTACTTACGC
CTGTCCAAAG TGCCGCCAAC GCCTTTGGCG CTGGCAGATG CCCGGCAGAT GCTTGGCCTC
GACCGCCCGA TTGCCACTCA ATATATCGAT TGGTTGGGCC ATGCCTTCCG GTTGGATTTT
GGCGTATCCT ATGCCACGCA AAGGCCGGTT TTGCCAGACT TGCTCTACTA TCTTCCGGCA
ACGCTGCAAC TGGCCGGGCT GGCGCTGATC CTGACCTTTG CCATTTCCAT CCCGATGGGT
GTCTGGGCAT CGCGCCACCG GAACAAGCTG CCCGATCATA TCGTGCGGCT GGTGTCATTC
CTGGGTGTGT CCATGCCCAA TTTCTGGCTG GGCTTTCTGC TGGTGCTGGT GTTTTCCGTG
CAGCTCGGCT GGCTTCCCGC CATGGGCCGC GGCGGCTTTG CCCATATGAT CATGCCGGCC
ATTGCCATCG CCTTCATGTC CCTGTCCATC AATGCGCGGC TGTTGCGCGC CAGCATGCTG
GAGGCTGCGG GGCAGCGCCA TGTGCTCTAT GCCCGGCTGC GTGGCCTTTC CAGACAGCGA
GTTGAGCGGG GCCATATCCT CAGAAACGCG CTTTTGCCAA TCATCACCGC CACGGGCATG
CATGTCGGCG AATTGCTTGG CGGCACGCTG GTGATTGAAA GTATTTTCGG CTGGCCCGGT
GTTGGCCGCT ATGCCGTTTC TGCCATCCTG AACCGGGACT ATCCCGTCAT TCAGTGTTTT
ACCTTGTTGA TGGTGGGCAT TTTCGTGACC TGTAATCTCC TTGTCGATAT TGCCTATGCA
TGGGCAGACC CACGGATCAG GCTGTCAGCG GGGCATGTCG AATGA
|
|---|
| Protein sequence | MGAFILRRIL LLIPMLLGAS LVIFLMLRLG PSDPAMDYLR LSKVPPTPLA LADARQMLGL
DRPIATQYID WLGHAFRLDF GVSYATQRPV LPDLLYYLPA TLQLAGLALI LTFAISIPMG
VWASRHRNKL PDHIVRLVSF LGVSMPNFWL GFLLVLVFSV QLGWLPAMGR GGFAHMIMPA
IAIAFMSLSI NARLLRASML EAAGQRHVLY ARLRGLSRQR VERGHILRNA LLPIITATGM
HVGELLGGTL VIESIFGWPG VGRYAVSAIL NRDYPVIQCF TLLMVGIFVT CNLLVDIAYA
WADPRIRLSA GHVE
|
|---|
| |