| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_7613 |
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| Symbol | nikA |
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| ID | 7380265 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011981 |
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| Strand | + |
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| Start bp | 553410 |
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| End bp | 554990 |
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| Gene Length | 1581 bp |
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| Protein Length | 526 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 643641617 |
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| Product | nickel ABC transporter periplasmic nickel-binding protein |
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| Protein accession | YP_002539914 |
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| Protein GI | 222102875 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
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| TIGRFAM ID | [TIGR02294] nickel ABC transporter, periplasmic nickel-binding protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATCAAAA CTTGCTTTCG CCATGCGGCA CTGGCGCTGA CGCTTGCCTT TTGCAGCCCT
CTTACCAATG CGCAGGCGGG CGAGACACTG AATTTTTCAT GGCCCATGAA TGTCGGCCCG
CTCAATCCCC ATCTCTATTC ACCCAATCAG ATGTTTGCGC AAAACATGGT GTATGAACCG
CTGGTGCGTT ATCAGGCCGA TGGCACCGTC AAGCCATGGC TGGCGCAATC GTGGGAGATT
TCGAACGAGG GGCGGACCTA TACGTTTCAA TTGCGCGACG GTGTGCGCTT TTCAAACGGC
GAACCCTTTG ATGCAGCAGC GGTAAAAGCC AATATTGATG CGGTGCTGGC CAATCGCTCC
CGTCATGCAT GGTTGGAATT GGCCAATGAG ATCGAAAGCG CTGATGTCGT TGACTCTTCG
CATGTGCGCA TCACACTGAA ACACGCCTAT TATCCTTTGC TTCAGGAATT GTCCCTGCCC
CGGCCCTTTC GGTTTATCGC CCCTTCGCAG TTCAGGCAGG GCGGCACAAA GGATGGCATT
GCCCAGCCGA TTGGCACTGG CCCATGGGTT TTGCAAGAAA CCCGCTTGGG CGAAAAAGAC
GTGTTTGTCC GCAACGACCG CTATTGGGGT GGCAAACCTG CCTTCGACAG TGTGACCGTC
AAGGTTATTC CCGATCCCAA CAGCCGCGCC ATTGCGTTTG AGACCGGCGA TATTGATCTG
ATCTATGGGG CCGATGGGCC GATCTCTCCC GATACGTTTG AGCGTTTCCG CAAAATGGGA
ACTTATACAA CAGAGCTTTC GCAGCCTTTG GAAACCTTGG TGCTGGCCAT CAATACGAAC
CTTGGTGCCA CAAAGGAACT TGCTGTGCGC AAGGCCATCA ACCATGCGGT GGACAAGGAC
AAGATGATTG CCACCGTGCT CTATGGCACC CAGCAACGCG CTGACACTCT TTTTGCCCCC
AATGTTCCCT ATGCCAATAT TGGTCTCAAA CCCTACCAGT TTGATCGATC CGTTGCGGAA
AAGCTGCTGG ATGACGCTGG CTGGAAACGC CTTGATCCGA AAGGCATTCG GCAGAAGGAT
GGCAAGCCGC TGTCCATCGA ATTATGCTTT ATCGGCACAG ACGCCATCAG CAAATCCATG
GCCGAGATTG TGCAGGCTGA TCTTGGTAAG GTGGGAATTC AGGTTATCCT GACCGGAGAG
GAAGAAAGCA GCATTTTGTC GCGTCAGCGC GATGGCCGGT TTGGCATGAT TTTCAACCGC
ACCTGGGGGC CTCCTTATGA TCCTCACGCC TTTGTCAGTT CCATGCGCAT TCCCTCCCAT
GCCGATTATC AGGCGCAGCT TGGCCTGCCG GACAAGGCGA AGATTGATCA GGAAATCGGC
GACGTGCTGA TCTCCACGGA TGAACACATC CGGCAGGATC TGTATCGGGA TATTCTGACC
CGATTGCATG ATGAAGCCGT CTATCTGCCG CTCACCTATG TTACCGCCAT TGCCGTTGCC
AAAAAGGAGC TTGGCCCCAT TCCGTTTGGG GCGATGTCGA GCGAAATTCC GTTTGATCAG
ATCAAGCAAA AGACGAACTG A
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| Protein sequence | MIKTCFRHAA LALTLAFCSP LTNAQAGETL NFSWPMNVGP LNPHLYSPNQ MFAQNMVYEP
LVRYQADGTV KPWLAQSWEI SNEGRTYTFQ LRDGVRFSNG EPFDAAAVKA NIDAVLANRS
RHAWLELANE IESADVVDSS HVRITLKHAY YPLLQELSLP RPFRFIAPSQ FRQGGTKDGI
AQPIGTGPWV LQETRLGEKD VFVRNDRYWG GKPAFDSVTV KVIPDPNSRA IAFETGDIDL
IYGADGPISP DTFERFRKMG TYTTELSQPL ETLVLAINTN LGATKELAVR KAINHAVDKD
KMIATVLYGT QQRADTLFAP NVPYANIGLK PYQFDRSVAE KLLDDAGWKR LDPKGIRQKD
GKPLSIELCF IGTDAISKSM AEIVQADLGK VGIQVILTGE EESSILSRQR DGRFGMIFNR
TWGPPYDPHA FVSSMRIPSH ADYQAQLGLP DKAKIDQEIG DVLISTDEHI RQDLYRDILT
RLHDEAVYLP LTYVTAIAVA KKELGPIPFG AMSSEIPFDQ IKQKTN
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