Gene Avi_7571 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_7571 
Symbol 
ID7380101 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011981 
Strand
Start bp515995 
End bp517008 
Gene Length1014 bp 
Protein Length337 aa 
Translation table11 
GC content60% 
IMG OID643641583 
Product6-phosphogluconate dehydrogenase-like protein 
Protein accessionYP_002539880 
Protein GI222102841 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1023] Predicted 6-phosphogluconate dehydrogenase 
TIGRFAM ID[TIGR00872] 6-phosphogluconate dehydrogenase (decarboxylating) 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAATTGG GAATGGTCGG CCTCGGTCGT ATGGGCGCGA ACATGGTGCG GCGTCTGATA 
AAGGCGGGGC ATGAATGCGT TGTCTATGAC GTCAATCCGC AAAACGTTGC TTCTCTTGAG
GCCGAAGGCG CTGTCGGCGC GGCGAGCTAC GCCGATTTTC TCGCCAAATT GGCGACGCCC
CGTGCTGTCT GGCTGATGCT GCCAGCCGCT ATCACGGGAA AGGTAGCCCG CGACCTGGCT
GGCGAAATGA CGAGCGGCGA TATTCTGATC GATGGCGGAA ACTCCTATTA CCGCGACGCG
GTCGATCTCG GAACTGAGCT TGGTTCTCAA GGTATTTCCT TCGTTGACGT CGGGACCAGT
GGCGGGGTCT GGGGGATCGA TCGTGGCTAT AGCCTGATGA TCGGCGGTGA GAAGAAAGCC
GCGCAGCATC TCGACCCCAT CTTTGCGGCG CTTGCTCCCG GAAAAGACGG CGCAGGGGCC
ACGGGCGGCA CGGCCGACGC GGGAACGGAA GGCTACCTGC ACTGCGGTCC GCCCGGTGCC
GGTCACTTCG TCAAGATGGT GCATAATGGT ATCGAATATG GAATCATGGC CGCCTATGCC
GAAGGGCTGA ACATCCTGAA GGCTGCTGAT GCAGGCAGCG AGGCGCGTGA CGCCGATGCC
GAAACCGCGC CATTGCGGGA TCCGCAATAC TACCGTTTCA ATCTTGATCT GGTGGCTGTG
ACAGAAGTCT GGCGCCATGG CAGTGTCATT GGCTCCTGGT TGCTTGATCT CACGGCATCC
GCGTTGAAGC AGGATCCGCA ATTGTCAAAC TATGGTGGTC GCGTGTCGGA TTCAGGCGAA
GGCCGTTGGA CATTGCAGGC GGCGGTCGAG ACTGGAGTAC CGGCTCCGGT CCTGTCTTCT
GCCTTGTTCG GACGCTTCAC CTCGCGCGAC AACGATGAGT TTGCCAACAA GCTGCTCTCG
GCCATGCGGC ACGCCTTTGG CGGTCATGTG GAGAAGCCGG AGAGCACGTC ATGA
 
Protein sequence
MQLGMVGLGR MGANMVRRLI KAGHECVVYD VNPQNVASLE AEGAVGAASY ADFLAKLATP 
RAVWLMLPAA ITGKVARDLA GEMTSGDILI DGGNSYYRDA VDLGTELGSQ GISFVDVGTS
GGVWGIDRGY SLMIGGEKKA AQHLDPIFAA LAPGKDGAGA TGGTADAGTE GYLHCGPPGA
GHFVKMVHNG IEYGIMAAYA EGLNILKAAD AGSEARDADA ETAPLRDPQY YRFNLDLVAV
TEVWRHGSVI GSWLLDLTAS ALKQDPQLSN YGGRVSDSGE GRWTLQAAVE TGVPAPVLSS
ALFGRFTSRD NDEFANKLLS AMRHAFGGHV EKPESTS