| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_7466 |
|---|
| Symbol | |
|---|
| ID | 7380484 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011981 |
|---|
| Strand | - |
|---|
| Start bp | 427750 |
|---|
| End bp | 429228 |
|---|
| Gene Length | 1479 bp |
|---|
| Protein Length | 492 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 643641511 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002539808 |
|---|
| Protein GI | 222102769 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1573] Uracil-DNA glycosylase |
|---|
| TIGRFAM ID | [TIGR00758] uracil-DNA glycosylase, family 4 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTGAGA CCTGCTTTCT CGAAGGTCGC GGTGATCTGT CTGAATGGCG CGAGGCCGCG
CGACGGTGCC TACAGGCTGG GATCGAACCA AAGGCAATCG ACTGGCAGCT TATCGGTGAT
GAACAGGGCT TGTTTGGTGC TGACGCAAGC CGATCCAAAG AGGGCAGCAC GCCAAGCCCG
GCAGAACGCA CAGGTGAAAC GGCGCAGATG TCCGTGCCGG CAACCTTCCT TCGGCTCGCA
GAAGCCGTTG TGTGTCATTC CGATCCCGGC CGCTTCGCTT TGCTTTATCG CCTTCTCTTT
CGGTTGAGGC AGGAACGCCA TCTTCTTGAG GTGAAGACGG ATGCCGATGT GGCGCTGGCG
TACCGGATGC AGAAGTCAGT GGGGCGCGAT TATCATAAGA TGACAGCCTT CCTGCGCTTC
AAGGAAGTGC CACTGCCTGT CGGTGTTGCA GTCCGGCGGC GCTTTCTCGC CTGGTTTGAG
CCTGACCACT TTATCGTCGC ACGTGTCGCG CCGTTTTTTC AACGTCGGTT CAATGACATG
GACTGGATTA TTTTGACGCC CCGCGGGTCC GCGTCCTGGG ATGGCCAGAC ACTTCTGACG
TCGACCGAGC CGGCAGTAAA GCCTGATATA CGCGATGAAA CCGACGATCT CTGGCGCATA
TATTATGCAT CCATCTTCAA TCCCGCCCGC TTGAAGGTGA AAATGATGAT GACGGAGATG
CCGAAGAAAT ATTGGAAGAA CCTGCCGGAG GCAGAGCTTA TTCCCGGCCT GATTGCCGGA
GCGGAAGCCA AGCTGATCGA TATGGCCCAG CGACAAGCCA GCGAGCCGCT CCCTTTCCAT
CATCGCCTCC AGGACGCTGC CGCGCGTGTG CCGGCAGCGC CAGTGGCCGA AGCGGACACG
ATAGATGCGC TGCGTCAGGA AGCGCGACGC TGCAATCGAT GTGATCTCTC CTGCCGGGCA
ACACAGACCG TGTTCGGCGA AGGGCCTGTT GATGCAAAGA TCATGGTCGT TGGAGAGCAG
CCGGGGGACC AGGAGGATCT CGCAGGCAGG CCATTCGTCG GACCGGCGGG CCGCGTGTTC
GACGAGGCTC TGGCGCAGGC CGGCATGGAC CGGCGCGCGC TCTACGTCAC CAACGCGGTG
AAGCACTTCA AGTATGAGCC ACGGGGAAAG CGCCGCATCC ATCAGCGCCC GAATATCGCA
GAGGTGCAGC AATGCAGATG GTGGCTCACC CAAGAGATCG AGATGGTGAA ACCAAAGCTG
ATTGTCGCCA TGGGCGCAAT CGCGCTGTTT TCGCTCACGG ATCGAAAGGA CCGCTTGGAG
GATGTCCGCA GCCGTCCAAT TGTCATGGAC GACACGCGAC ATCTATTCGT GACCGTTCAT
CCGTCCTACC TGCTGCGTAT TCCGGACGAG ATCAAGAGAA ACGAAGAACT CGCGCGCTTT
CGAGAAGATA TAAGCCAGAT CGGTAGGCTT GTTTGTTGA
|
|---|
| Protein sequence | MTETCFLEGR GDLSEWREAA RRCLQAGIEP KAIDWQLIGD EQGLFGADAS RSKEGSTPSP
AERTGETAQM SVPATFLRLA EAVVCHSDPG RFALLYRLLF RLRQERHLLE VKTDADVALA
YRMQKSVGRD YHKMTAFLRF KEVPLPVGVA VRRRFLAWFE PDHFIVARVA PFFQRRFNDM
DWIILTPRGS ASWDGQTLLT STEPAVKPDI RDETDDLWRI YYASIFNPAR LKVKMMMTEM
PKKYWKNLPE AELIPGLIAG AEAKLIDMAQ RQASEPLPFH HRLQDAAARV PAAPVAEADT
IDALRQEARR CNRCDLSCRA TQTVFGEGPV DAKIMVVGEQ PGDQEDLAGR PFVGPAGRVF
DEALAQAGMD RRALYVTNAV KHFKYEPRGK RRIHQRPNIA EVQQCRWWLT QEIEMVKPKL
IVAMGAIALF SLTDRKDRLE DVRSRPIVMD DTRHLFVTVH PSYLLRIPDE IKRNEELARF
REDISQIGRL VC
|
|---|
| |