Gene Avi_7453 details

Gene Information

• Locus tag: Avi_7453
• Symbol: afuC
• ID: 7380476
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011981
• Strand: +
• Start bp: 419448
• End bp: 420491
• Gene Length: 1044 bp
• Protein Length: 347 aa
• Translation table: 11
• GC content: 57%
• IMG OID: 643641504
• Product: ABC transporter nucleotide binding/ATPase protein (iron)
• Protein accession: YP_002539801
• Protein GI: 222102762
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG3842] ABC-type spermidine/putrescine transport systems, ATPase components
• TIGRFAM ID: [TIGR01277] thiamine ABC transporter, ATP-binding protein

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCCACAC TCGCCCTCGA AAACGTCTCG AAAAACTATT CCATCGTCAC CGCGATTGAG 
CCTTTGTCGC TCACGATTGA TGATGGTGAA CTGGTCTGCC TGCTCGGCCC ATCCGGGTCG 
GGAAAATCAA CATTGCTGCG CATTATTGGC GGGTTCGAGA CGCCGTCGGG CGGCAAGGTG 
CTGATTGATG GCGTGGATGT TGCACGGACG CCGCCGGAAA AACGCCCTAC CGCCATGGTC 
TTCCAAAGCC ATGCCCTGTG GCAGCACATG ACCGTGTTTG AAAACATTGC CTTTGGCCTG 
ACGCTGCGCG GCCTGCCGAA AGCCGAGATT GCCCGCAAGG CCTCCGATGC CTTGGCCATG 
GTGGGGTTGG CGGATTATGG CAAGCGCCTC CCGGCGCATC TGTCCGGCGG CCAGCGTCAG 
CGTGTTGCCA TTGCTCGCTG CGTCGTGCTG GAGCCCAAAA TTCTGCTGAT GGATGAGCCT 
TTTGCCAGCC TCGATCAACA CCTGCGCGAC CGTTTGCGCG AAGAGGTGCG GCAAATCCAG 
AAAAAACTCG GCATTACCAC CGTGTTCGTC ACCCATGGTC AGGATGAAGC GCTCTCTGTT 
GCTGACCGGA TTGTGGTGAT GAGCATGGGG CGAATTGAAC AGGTGGGCAC GCCGCGCGAA 
ATTTACTCAA CGCCCAATTC GCCTTTTGTT GCCAGCTTCA TTGGCGATAT GAATTCCCAT 
AGCATTCAGA TCAACCAAGG TGGCGCGCAT CTGGGTGGCG TTGCTATTGA TGCGCCCATT 
GAGGCGGGCG AGGCACTGTT AACTGTGCGC CCGGAAGATA TTGTCCTGTC GCCATCCGAT 
GATCAGCAAG GGGCGTGTGT GCGGCGTATT GTCAATTACG GCTCTTTCCT CAAGATCGAG 
GCGCAAGCGC AGGATGGCAC CGTCTGGAAA GTTCAAACAC CGAAAGACGC CGACATCAAG 
GAAGGGGTGT TCTATACCCC GGTTGTCGCC CGCTACACGG TGTTTCGCGA TAACAAGGCC 
GTGCATCATG CCGGGCCTGC ATAA 

 

Protein sequence

MSTLALENVS KNYSIVTAIE PLSLTIDDGE LVCLLGPSGS GKSTLLRIIG GFETPSGGKV 
LIDGVDVART PPEKRPTAMV FQSHALWQHM TVFENIAFGL TLRGLPKAEI ARKASDALAM 
VGLADYGKRL PAHLSGGQRQ RVAIARCVVL EPKILLMDEP FASLDQHLRD RLREEVRQIQ 
KKLGITTVFV THGQDEALSV ADRIVVMSMG RIEQVGTPRE IYSTPNSPFV ASFIGDMNSH 
SIQINQGGAH LGGVAIDAPI EAGEALLTVR PEDIVLSPSD DQQGACVRRI VNYGSFLKIE 
AQAQDGTVWK VQTPKDADIK EGVFYTPVVA RYTVFRDNKA VHHAGPA