Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_7450 |
Symbol | |
ID | 7380473 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011981 |
Strand | + |
Start bp | 416575 |
End bp | 417717 |
Gene Length | 1143 bp |
Protein Length | 380 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 643641501 |
Product | extracellular solute-binding protein |
Protein accession | YP_002539798 |
Protein GI | 222102759 |
COG category | [R] General function prediction only |
COG ID | [COG4134] ABC-type uncharacterized transport system, periplasmic component |
TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCCATGC AACGACGTGA ATTCCTGAAA TATTCTGCGA CGGGTGTTGG TCTGGCTGTG GCTGGTGCAA GGCCCGCCTT TGCGGCCCCC GGTGTTCTCG ACATATTCTT CAACAGCGAT ACCAATGTCA TTGATTTCTG GACCCAGGTG ATCAAGCCGG GTTTTGAGGC GGCCCATTCC GGTGTGACGC TCAATCTTGT TCCGGGCGGT GGCGGTTCCG CGATGAATTC TCTGGCTGAT CGCGCTATGG CCGCCTTCAA AGCCAAGAAG GACCCACAGG TCGATATGCT GGAAGCTGTA ACCCCGTTTT ATCCCACAGG GTCGCTGGAA GCCGGTCTCT GGGTGGATTT TTCCAAGGCT GGCCTGTCCA ATTACGACAA GGTCAACCCG GTCGTGGTGC AAAGCCCGGC GCTTTTGCCC TATCGCGGCT CGCAAGTCGT GATGATGTAT AATGCCGACA AGGTCAAAGC CGTCCCCACC ACCTTCAAGG AACTTGTGGC GTGGATCAAG GCCAATCCCG GCCAGTTTGC CTATGCTCGT CCTGATCTTG GCGATTCCGG GGCATGCTTT ATCGAGCGTG CGCTTCAGGA AGTCACCGGT CTGAACCCTG ATCTGTTCCT GCCGGAAAAT TACACCCCGG CCTATGCCGA GCCGCTGTTT TCCAAGCTCT GGCCTTTGCT CAAGGATATT CAGCCATCGC TGTTCAATGG CGGTGAATAC ACATCCGGTA ACACAGCGTC CATCCAGATG CTGGCCAGTG GTGCTGTTTC CATGACCGTT GCCTGGTCAG ACATGGCCTT GCAGGCGATG AGCCAGGGCG TGGTGCCTGA GACAACATCT GTTGCGCAGT TGCAGGATCT GGCGTTTACC GGCGGCTTCT CCGGCATTGT TGTGCCAACG GTTGCGGCCA ACAAGGATAT GGTGCTCAAA CTCGCTGATT ACCTGATCAC AGCGGACATC CAGAACCACG TTGTGACCGA CCTTGGCGGC TTCCCAGGCA TCAAGTGGGA GTTCATGTCC AAGGAACTTC AGGATAAATT CGCAAAAGTC GCGCCCAAAT CCATCCCGCT TTTCCCCGGC ACATGGGAGC CTGCACTGTT TGAGGGCTGG TATCGTAACG TCGCATCGAA CATCAAACGC TGA
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Protein sequence | MPMQRREFLK YSATGVGLAV AGARPAFAAP GVLDIFFNSD TNVIDFWTQV IKPGFEAAHS GVTLNLVPGG GGSAMNSLAD RAMAAFKAKK DPQVDMLEAV TPFYPTGSLE AGLWVDFSKA GLSNYDKVNP VVVQSPALLP YRGSQVVMMY NADKVKAVPT TFKELVAWIK ANPGQFAYAR PDLGDSGACF IERALQEVTG LNPDLFLPEN YTPAYAEPLF SKLWPLLKDI QPSLFNGGEY TSGNTASIQM LASGAVSMTV AWSDMALQAM SQGVVPETTS VAQLQDLAFT GGFSGIVVPT VAANKDMVLK LADYLITADI QNHVVTDLGG FPGIKWEFMS KELQDKFAKV APKSIPLFPG TWEPALFEGW YRNVASNIKR
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