Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_7367 |
Symbol | |
ID | 7380409 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011981 |
Strand | + |
Start bp | 343453 |
End bp | 344328 |
Gene Length | 876 bp |
Protein Length | 291 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 643641437 |
Product | DNA-binding transcriptional repressor RpiR |
Protein accession | YP_002539734 |
Protein GI | 222102695 |
COG category | [K] Transcription |
COG ID | [COG1737] Transcriptional regulators |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.276033 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAACGCTG ATGGCTTTGA CATGAAGGCG GTAGGGCCGC GCATTCGCAT GATGATGCCA ATGCTGACCC CGCTGGAAGC AAAGGTCGTG GATACGGTTT TTGGCATGCG TGATTTCAGC GAGGAGACCT CGCTGAAGCA AATCGCCGAA AATGCCGGGG TTTCGGAAGC CATGGTGGTG AAGATCACCA AGAAGCTCGG TTTTTCCGGC TTTCGGGATT TCCGGTCTTC CGTCAGCCAG TATAACCGCC AGCCGACCAC CGAAATGCAT CAGGAATTGT CGGTTGACGA TACCTCGCTT GAAATCGTTC AGAAAGTCTT TCGCACCTCG ATCCACGCCC TTGAGGAAAC ACTTGCCATT CTGGACATGG CAGCCTTCGA CCAGGCGGCG GACATGATCC ATAAGGCTCG AAACCGGGAT TTCTACGGCG TCGGCGGCTC GGCGCAGATC GCCCGGGATG TCGCCCACAA ATTTTTGAGA ATTGGCGTGC GCGCCAGCGT CTTCGATGAT TCACACATGA TGCTGATGTC GGCGGCCCTT CTCGCCGATA CCGATGTCGC CATTGGCTTT TCGCATTCGG GCAACACGAT TGCCGTGATC GAGGCCCTGC AACTTGCCCG CAAGAACGGT GCCAGCACCA TTGCCGTGAC CAATTACGGT TCCTCCGCGC TCGCCCAGTC CGCCGACGTG GTCTTGTGTT CCACCGCACA AGGCTCGCCT TTGATGGGGG AAAATGCCGC GGCGCGCATT GCGCAGCTCA ATATTCTCGA CGCCATTTTC GTCGCCGTCG CCCAGCGCGA CTATCAGGCC GCCGAGCGCA ATCTCGACCG CACCATGTCC GCCGTCACCT CTAAACGTAG AGATCGCCTT CCATGA
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Protein sequence | MNADGFDMKA VGPRIRMMMP MLTPLEAKVV DTVFGMRDFS EETSLKQIAE NAGVSEAMVV KITKKLGFSG FRDFRSSVSQ YNRQPTTEMH QELSVDDTSL EIVQKVFRTS IHALEETLAI LDMAAFDQAA DMIHKARNRD FYGVGGSAQI ARDVAHKFLR IGVRASVFDD SHMMLMSAAL LADTDVAIGF SHSGNTIAVI EALQLARKNG ASTIAVTNYG SSALAQSADV VLCSTAQGSP LMGENAAARI AQLNILDAIF VAVAQRDYQA AERNLDRTMS AVTSKRRDRL P
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