Gene Avi_7367 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_7367 
Symbol 
ID7380409 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011981 
Strand
Start bp343453 
End bp344328 
Gene Length876 bp 
Protein Length291 aa 
Translation table11 
GC content58% 
IMG OID643641437 
ProductDNA-binding transcriptional repressor RpiR 
Protein accessionYP_002539734 
Protein GI222102695 
COG category[K] Transcription 
COG ID[COG1737] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.276033 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACGCTG ATGGCTTTGA CATGAAGGCG GTAGGGCCGC GCATTCGCAT GATGATGCCA 
ATGCTGACCC CGCTGGAAGC AAAGGTCGTG GATACGGTTT TTGGCATGCG TGATTTCAGC
GAGGAGACCT CGCTGAAGCA AATCGCCGAA AATGCCGGGG TTTCGGAAGC CATGGTGGTG
AAGATCACCA AGAAGCTCGG TTTTTCCGGC TTTCGGGATT TCCGGTCTTC CGTCAGCCAG
TATAACCGCC AGCCGACCAC CGAAATGCAT CAGGAATTGT CGGTTGACGA TACCTCGCTT
GAAATCGTTC AGAAAGTCTT TCGCACCTCG ATCCACGCCC TTGAGGAAAC ACTTGCCATT
CTGGACATGG CAGCCTTCGA CCAGGCGGCG GACATGATCC ATAAGGCTCG AAACCGGGAT
TTCTACGGCG TCGGCGGCTC GGCGCAGATC GCCCGGGATG TCGCCCACAA ATTTTTGAGA
ATTGGCGTGC GCGCCAGCGT CTTCGATGAT TCACACATGA TGCTGATGTC GGCGGCCCTT
CTCGCCGATA CCGATGTCGC CATTGGCTTT TCGCATTCGG GCAACACGAT TGCCGTGATC
GAGGCCCTGC AACTTGCCCG CAAGAACGGT GCCAGCACCA TTGCCGTGAC CAATTACGGT
TCCTCCGCGC TCGCCCAGTC CGCCGACGTG GTCTTGTGTT CCACCGCACA AGGCTCGCCT
TTGATGGGGG AAAATGCCGC GGCGCGCATT GCGCAGCTCA ATATTCTCGA CGCCATTTTC
GTCGCCGTCG CCCAGCGCGA CTATCAGGCC GCCGAGCGCA ATCTCGACCG CACCATGTCC
GCCGTCACCT CTAAACGTAG AGATCGCCTT CCATGA
 
Protein sequence
MNADGFDMKA VGPRIRMMMP MLTPLEAKVV DTVFGMRDFS EETSLKQIAE NAGVSEAMVV 
KITKKLGFSG FRDFRSSVSQ YNRQPTTEMH QELSVDDTSL EIVQKVFRTS IHALEETLAI
LDMAAFDQAA DMIHKARNRD FYGVGGSAQI ARDVAHKFLR IGVRASVFDD SHMMLMSAAL
LADTDVAIGF SHSGNTIAVI EALQLARKNG ASTIAVTNYG SSALAQSADV VLCSTAQGSP
LMGENAAARI AQLNILDAIF VAVAQRDYQA AERNLDRTMS AVTSKRRDRL P