Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_7308 |
Symbol | |
ID | 7380527 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011981 |
Strand | + |
Start bp | 276366 |
End bp | 278633 |
Gene Length | 2268 bp |
Protein Length | 755 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 643641391 |
Product | polyketide synthetase |
Protein accession | YP_002539688 |
Protein GI | 222102649 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.39684 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCAGTGA ACGATACGTC CTGGACGCAA CGAACCTCGG AAAGTTCAGT GGATTTTATA TCTATAATTC ATATGCTTGA GCATCGTGCT CGGGATATGG AGGATGATGT GGCCATGCGC TTCTTTCATG ATGACGCGGT CGCTGCGGCG CAGGCGAGGC CGGATTCCTG GACCTGGCGC ATGCTTCGCG ATCGGGCGCG GCGTGTTGGT CAAGAGATTG CGCAGACAGG ACTTGTCATC CCCGGCGCAC GTATTCTCGT GGTCTATCCG CCGGGCCTTA GCTTCATCGC CGCTTTCCTT GGATGCCTTT ACGCAGGCAC TGTTCCCGTG CCCGTTCCGG CCCCGCGGCG TGCTGATGGA ATCAATCGCT GGCTGCATAT CGCGCAGGAT GCCGGGATCT CCGGAATTCT CTGTGCCGAC GACCTTCTGG ACGGGCTTCG CCCCCTTCAA CGGGCAGTCG GACATGGCTT TGCGCTCGCC CCTAAAGCAG CCGATCCGGC GCGCCCGGTC GTCTTTGAAG ATGACGGCAG GCCATTCCAT GCGCCGGAGG CAAAGCATGT CGCTTTCTTG CAATATACGT CGGGTTCGAC GAGCGATCCG AAGGGGGTCA TGGTCACGCA TGGCAACCTG ATGGCCAATC TGCGGCAGAT CAGCACTGCC TTCGAATACG ACCCATCCGA CATATCCGCC TGCTGGCTGC CGCACTATCA CGATATGGGG CTGATCGACG GCATCCTGTC GCCGGTGTTC AACGGCTTTC CAGTGGCGCT GATGGCGCCT GCCTCGTTCC TGCGCAGGCC TCTGCGCTTT CTGGAGCTGG CAAGCCATGT TCGCGCCACC GTCATTGGCG GCCCGAATTT TTCCTACGAG CACTGCGTCG ATAAATATGC GCCGGAGGCG GCCGCCGGAC TTGATCTCTC CAACGTCCGA ATCGCCTATA ACGGGGCCGA ACCGATCCGC CCGAAGACGC TAGAGCGCTT CACCGCCGCC TTTGCGCCCC ACGGTTTCCA TAGTAGGGCC TTTTATTGTT GCTACGGGCA GGCAGAAGCC ACGCTGTTCC AGACGGGTAA CAGTCCCGAC GATCCACCGC TGATCCTGTC CGTCAGCCGC AAGGCGCTTG TCGAAACCGG GGCTGCGGTC GAAGCGGATG ATGGCGACGA GCATGATAAG CTCGCCCTTG CCGCCTGCGG TCGCCCTGCC GAGGGGCTTG ACCTTGCGCT TGTCGATCCC GAGGCGGGCC TGCGTGTGGA TGATGGCACG GTCGGCGAGA TCTGGATTCG GGGTCCGAAC GTGACCCCCG GCTATTGGGG CCGCGCTAAA CTGAACGCAG AGACCTTTGA TCAGGTGCTG GATGGATCGC GTGGTTGGCG CCGGACCGGT GATCTGGGCT TTCGCCGCAA TGGGCAGCTC TACATCACTG GTCGGCTGAA AGACCTGGTG ATCATCCGCG GGCAGAACCA TCACCCGGAA GATATTGAGC AATCCGTTTT CTCCAGCCAT CCGGCGCTTG CACAAGGCCG GGCAGGGGTC TTTGCCATCG AGGTCGATGG CGAGGAGCAA TTGGGCGTGG TCTGTGAGCT GACCCGCGAG GGCCTGCGCG ATCTTGATGG TGATGACGTC ATCCGTGCCG TGCGCGGTGC CGTCTCGCGC AATCACAATG TCAGGGCCGC CGTCATTGCG CTGCTGCGGC CGAGCAGTCT GCCACGCACG CCGAGTGGAA AAGTCCGCCG CTTCGCTTGC CGACAGGGGA TCGTGACGGG GGATCTGCGC ATCGTTGCCC GCTGGGATGC AAAGCCGCAG AGCGTGCTCA ATGCCCCGGC AATTGCCGAG CAACGAAGCT GGCGTGACCA GCTTCTGGAG GTGCCCAAAG CTCTTCGCAA GGAAGCACTG CGGCATCTGC TGCGGCAGGA AGTGGCTATG CTTGCCCGGC TGGGCGAAGG GGATTTGCCC GGAAATTCCG CTGGTTTCTT CGATCTTGGT CTCGACTCTG TGGCGCTCGT CAATATCGGC GCTACGGTTG AGCGGGAACT CGGCGTGCCG GTCCGGCCAA CACTGATTTT CGAACATCCC ACCATCCTGG CCCTTTCGGA CCATCTCTAC GGCCTCATCG AAGACGATCA ATCGGAGACC GTGCCTCTTC AGGACGTAAA GCTCCAGAGC AATGGGCCTG TGGCTCAGAC CCCGCCCGCG TTAGCATCTG GGTCTGCCTC TGTCGCCAGC TCCGCTATTA CCTCGGAACT TGCTGCCCTG AAGGCATTGC TTCGCTGA
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Protein sequence | MAVNDTSWTQ RTSESSVDFI SIIHMLEHRA RDMEDDVAMR FFHDDAVAAA QARPDSWTWR MLRDRARRVG QEIAQTGLVI PGARILVVYP PGLSFIAAFL GCLYAGTVPV PVPAPRRADG INRWLHIAQD AGISGILCAD DLLDGLRPLQ RAVGHGFALA PKAADPARPV VFEDDGRPFH APEAKHVAFL QYTSGSTSDP KGVMVTHGNL MANLRQISTA FEYDPSDISA CWLPHYHDMG LIDGILSPVF NGFPVALMAP ASFLRRPLRF LELASHVRAT VIGGPNFSYE HCVDKYAPEA AAGLDLSNVR IAYNGAEPIR PKTLERFTAA FAPHGFHSRA FYCCYGQAEA TLFQTGNSPD DPPLILSVSR KALVETGAAV EADDGDEHDK LALAACGRPA EGLDLALVDP EAGLRVDDGT VGEIWIRGPN VTPGYWGRAK LNAETFDQVL DGSRGWRRTG DLGFRRNGQL YITGRLKDLV IIRGQNHHPE DIEQSVFSSH PALAQGRAGV FAIEVDGEEQ LGVVCELTRE GLRDLDGDDV IRAVRGAVSR NHNVRAAVIA LLRPSSLPRT PSGKVRRFAC RQGIVTGDLR IVARWDAKPQ SVLNAPAIAE QRSWRDQLLE VPKALRKEAL RHLLRQEVAM LARLGEGDLP GNSAGFFDLG LDSVALVNIG ATVERELGVP VRPTLIFEHP TILALSDHLY GLIEDDQSET VPLQDVKLQS NGPVAQTPPA LASGSASVAS SAITSELAAL KALLR
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