| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_7258 |
|---|
| Symbol | dapA |
|---|
| ID | 7380404 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011981 |
|---|
| Strand | - |
|---|
| Start bp | 215959 |
|---|
| End bp | 216870 |
|---|
| Gene Length | 912 bp |
|---|
| Protein Length | 303 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 643641350 |
|---|
| Product | dihydrodipicolinate synthase |
|---|
| Protein accession | YP_002539647 |
|---|
| Protein GI | 222102608 |
|---|
| COG category | [E] Amino acid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0329] Dihydrodipicolinate synthase/N-acetylneuraminate lyase |
|---|
| TIGRFAM ID | [TIGR00674] dihydrodipicolinate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAATTCG AAGGTATCTA TACCCCGGCG GTGACACCGC TTGGGCCAGA TGGGCAGATT
GATCGTGAAG GCTTTGCCGC CGTCCTTGAA TCGCTCATCG AAGCGAAGGT TCATGGTATC
ATTGTCGGCG GTTCAACGGG TGAATATTAC GCCCAGAGCG CCCAAGAGCG CCTTGATCTT
GCGGCCCATG CAAAAGATGT GATCGGAACC AGAATTCCGC TGATCATCGG CACGGGCGCA
ACCAGAACGG AAGATTCCGT GGCCTACGCC ATTGCTGCCA AAGACATTGG TGCTGACGCC
ATCCTGGTGT CGTCTCCGCC CTATGCGCTG CCAACGGAGC GCGAGAACGC TGTTCATGCG
CTGACGGTAG ATCGCGCCGC CAACCTGCCG ATCATGCTCT ACAACTATCC AGCCCGTATG
GGTGTGGTGA TGGGAGATGA ATATTTTTCC CGGGTTGGCA AATCCAAAAA TGTCGTGGCG
ATCAAGGAAA GCTCTGGCGA CATGGCCAAC CTTCACCTTC TGGCCCGGAA GTTTCCTCAT
ATCGGCCTGT CTTGTGGATG GGACGACCAG GCGCTCGAAT TCTTCGCCTG GGGAGCAAAA
AGCTGGGTCT GCGCTGGCTC GAACTTCCTG CCGCGCGAGC ATGTCGCGCT TTATGAAGCC
TGCGTTCTGG AGAAGAATTT CGACAAGGGC CGCGCGATCA TGACCGCGAT GCTGCCGCTG
ATGGATTTTC TCGAATGCGG TAAATTCGTT CAGTCGATCA AATATGGCTG TGAACTGATC
GGCCTGAAGA CCGGCTCGGT ACGCGCACCG CTACGGCCGC TGAACGCCGA AGAAAAAAGA
ACCCTTGAGA CCGTCGTCAC GACTGTGAAG CGCACGGTTG CCCAGATCAC CTCGGGAGCC
AACAATGCAT GA
|
|---|
| Protein sequence | MKFEGIYTPA VTPLGPDGQI DREGFAAVLE SLIEAKVHGI IVGGSTGEYY AQSAQERLDL
AAHAKDVIGT RIPLIIGTGA TRTEDSVAYA IAAKDIGADA ILVSSPPYAL PTERENAVHA
LTVDRAANLP IMLYNYPARM GVVMGDEYFS RVGKSKNVVA IKESSGDMAN LHLLARKFPH
IGLSCGWDDQ ALEFFAWGAK SWVCAGSNFL PREHVALYEA CVLEKNFDKG RAIMTAMLPL
MDFLECGKFV QSIKYGCELI GLKTGSVRAP LRPLNAEEKR TLETVVTTVK RTVAQITSGA
NNA
|
|---|
| |