| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_7212 |
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| Symbol | |
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| ID | 7380370 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011981 |
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| Strand | - |
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| Start bp | 181186 |
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| End bp | 182781 |
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| Gene Length | 1596 bp |
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| Protein Length | 531 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 643641317 |
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| Product | ABC transporter substrate binding protein (oligopeptide) |
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| Protein accession | YP_002539614 |
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| Protein GI | 222102575 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGCTCA CCAGACGCGA CTTTCACCGC ATTGCCCTTG CCGCAGGGGC CTTCACGGCG
CTGCCCGGCG GGGCCTTTGC CGCCGCAGAA GAGCCAATTT CCGGCGGAAC GCTGAAGATT
GTTTATTTTC CCGAGCCAAC CCAGTTGGTG GCCATCAACA CCAGCTCGGG CGGTGCGCAA
TTCATCGGAG CCAAAATTTT CGATGGTTTG CTGACCTATG ATTACGACCT GACGCCCAAA
CCAGCGCTGG CCAAGGAATG GAGCATTTCA CCTGACGGTA AGACCTATAT CTTCCATCTG
CGCCCCAATG TAACCTTCCA TGATGGCAAG CCGTTGACAT CGGCGGATGT CGCCTTTTCG
ATTTTCCGCC TCAAGGAAGC CCATCCGCGG GGACGGGCTA TTTTTGCCAC CGTGGAAAGC
ATTGATACCA GCGATCCGCT GGTGGCAAAG CTCATCCTTT CCAAGCCGAC GCCAGCGCTG
ATCACCGCCC TGTCTGGCTC TGAATCACCC ATTGTGCCAA AGCACATTTT CGAGACCTTC
AAGCCCACCG AAAATCCAAA GCCGCAGCAG ATTATTGGCA GCGGCCCCTT TGCGCTGAAG
GAATGGGTGC CGGGCAGCCA TATTCTGCTG GAACGCAATG CTGCCCATTG GGATGCGCCA
AGGCCCTATC TCGACCGCGT TATTCTGAGG CTGATCAATG ATGCCAGCGC TCGCTCGGCA
GCCCTTGAAA CCGGGGAGGC CGATATTGGT CCCAATCCGG TTCCGCTTTC TGATCTGGAT
CGGTTGAAAA GCGTTGCGAC ACTCAAGGTC GATGATCAGA TCTATGCCTA TGCGGGCCAG
CAGAACCAGT TGGTGATCAA TCTGGAAAAC AGCTACCTGA AGGAGCAGAA AGTCCGCCAA
GCCATTGCCC ATGCCATCGA TGTGAAGGCG CTGATCAACA TCGTGCTCTA TGGCTATGGC
ATCCCCTCAC CCACGCCGAT CAGCCCCGGT CTGGCGAAAT TTCACAATCC CGATATTGGC
TTTGCCAAAT ATGATGTGGC CTTAGCCGAA AAACTGCTGG ATGAAGCGGG CTTTCGCCGT
CAAGCAAACG GCAAGCGTTT CAAGCTAAGG GTCACGACCA ACCCGTTTAA TCCGGCGAGC
TATTCAGACT TTATCGCACA AGCGCTGATC AAGATCGGCA TTGAGGCGGA TATTCAAAAA
TTCGATTTCG GCACCTATGT CAAAGTGGTC TATACGGACC GCGCCTGGGA TCTTTCGGTG
GAATCGCTCT CCAACACATT TGATCCCACC GCTGGCGTGC AGCGGGTCTA TTGGAGCAAG
AATTTCAAAA TCGGCCTGCC CTTTTCCAAC GCCAGCCACT ACGAAAACCC GGAGGTGGAC
CGCCTGCTGG AAGCGGCTGC GGTGGAGCCG GACATTGAAA AACGCGCCCA ATTGTTTAGG
GATTTTCAGG TGATCATCGC CCGCGATCTT CCCGTGATCA ATCTCGTTTC CCCCATCCAA
CCCGTGGTGG GCAACAAGCG CGTGCGCAAT TACGCTTATG GCGCGGAAGG TCTGATTGGC
AACCTTGCCT ATGCCAGCCT TGCAAAAAAC AGCTAA
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| Protein sequence | MTLTRRDFHR IALAAGAFTA LPGGAFAAAE EPISGGTLKI VYFPEPTQLV AINTSSGGAQ
FIGAKIFDGL LTYDYDLTPK PALAKEWSIS PDGKTYIFHL RPNVTFHDGK PLTSADVAFS
IFRLKEAHPR GRAIFATVES IDTSDPLVAK LILSKPTPAL ITALSGSESP IVPKHIFETF
KPTENPKPQQ IIGSGPFALK EWVPGSHILL ERNAAHWDAP RPYLDRVILR LINDASARSA
ALETGEADIG PNPVPLSDLD RLKSVATLKV DDQIYAYAGQ QNQLVINLEN SYLKEQKVRQ
AIAHAIDVKA LINIVLYGYG IPSPTPISPG LAKFHNPDIG FAKYDVALAE KLLDEAGFRR
QANGKRFKLR VTTNPFNPAS YSDFIAQALI KIGIEADIQK FDFGTYVKVV YTDRAWDLSV
ESLSNTFDPT AGVQRVYWSK NFKIGLPFSN ASHYENPEVD RLLEAAAVEP DIEKRAQLFR
DFQVIIARDL PVINLVSPIQ PVVGNKRVRN YAYGAEGLIG NLAYASLAKN S
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