| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_7189 |
|---|
| Symbol | acd |
|---|
| ID | 7380349 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011981 |
|---|
| Strand | + |
|---|
| Start bp | 153997 |
|---|
| End bp | 155235 |
|---|
| Gene Length | 1239 bp |
|---|
| Protein Length | 412 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 643641297 |
|---|
| Product | acyl-CoA dehydrogenase |
|---|
| Protein accession | YP_002539594 |
|---|
| Protein GI | 222102555 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1960] Acyl-CoA dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATGACCA TGCCCCACAG CGCGCGTGTT CCAGATAGCA CCGAGGCCTT AACCCGCGAT
GGCTTGCTTG CGCAGGCCCG CACCCTGTCC GACACCTTTG CCAAGGATGC AGCCCGCAGC
GAGCTGGAAC GGGAATTGCC GTTTGAGGCT TTCCGGCTGA TCAAGGAGGC ACGGCTCGGC
ACGCTGCGTA TTCCCAAAGC CAAGGGTGGA CCGGGTGGAT CAATTGCCGA TTATATCGAG
CTGTTGATGA TTTTGGGTGA AGCCGATAGC AATATACCCC ACGCCTTGCG CAGTCATTTC
AACTTCACCG AAGGGCTGGC GCTTGGCCCA ACCGTGCTGG AAGACCGCCG ACATCTGGAC
CATGTGCTGG AGGGAAAACT GTTTGCCGGA GCCAGCACCG AGCAGGGCAC GAAACGGCCC
GGCGAAATCA CCACGGTTCT CAGCCGTGAG GGCGATCACT ATCGGCTGAA TGGGCGCAAA
TGGTATGCCA CCGGCACGGC CTTTGCCGAT TTTGGCTCCT TCAGCGCGGT GGATGAACAG
GGAGATCCCA TCGGCGTGCT GATCCCGCTG GATCGCAAGG GCATTACCAT TCTGGATGAC
TGGGATGGCA TGGGCCAGCG CATGACGGCC AGCGGTGGCG TGTTGCTGGA AAATGTCGAG
GTGCTGGCGC ATGAAGTAAC TGGCCGCAAG CTCTCCAGCC AGATTGGTCG CCATTGCGGC
GCGCTGCGGC AACTGCATCT GGCGGCATCG GCTGCGGGTG CCGTGCAAGG GGCGGTGAAA
GATGGCATTG ATTATGTGCT CAACCACGCC CGCACCACCC TGCACAGCAC AGCAGAAACC
GCCAATGACG ATCCTTTTGT GCAAAAAATG CTGGGTGAAA TCACCTCGGG TGCCTTTGCG
GTTCAAACCT TGATCCGCGA AGCCGCACGC GCACTGGACC GCACGGCAGA GACCTTTGCA
ATGGGCGATG AAGAGGCGAT TGAAACAGCA CTGATTTCTG CCTCGCTCAT CACCGCCCAG
ACGCAGATCA TTACCTCGCA ACTGGCACTT TCGGTGGCCA CCAATATCTT CGAGCTGGGC
GGCGGCTCGG CCACCTCGCG CCGATTTAAT CTTGATCGCC ACTGGCGCAA TATTCGCACC
GTCTACAATC ACAATCCGTT GCTGCACAAG GCGCGGGTGG TCGGCGATTA TTACCTGAAC
GGCACCACCA CGCATTTGAA AGAAGGCCGG GTGTTCTAA
|
|---|
| Protein sequence | MMTMPHSARV PDSTEALTRD GLLAQARTLS DTFAKDAARS ELERELPFEA FRLIKEARLG
TLRIPKAKGG PGGSIADYIE LLMILGEADS NIPHALRSHF NFTEGLALGP TVLEDRRHLD
HVLEGKLFAG ASTEQGTKRP GEITTVLSRE GDHYRLNGRK WYATGTAFAD FGSFSAVDEQ
GDPIGVLIPL DRKGITILDD WDGMGQRMTA SGGVLLENVE VLAHEVTGRK LSSQIGRHCG
ALRQLHLAAS AAGAVQGAVK DGIDYVLNHA RTTLHSTAET ANDDPFVQKM LGEITSGAFA
VQTLIREAAR ALDRTAETFA MGDEEAIETA LISASLITAQ TQIITSQLAL SVATNIFELG
GGSATSRRFN LDRHWRNIRT VYNHNPLLHK ARVVGDYYLN GTTTHLKEGR VF
|
|---|
| |