| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_7175 |
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| Symbol | |
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| ID | 7380340 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011981 |
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| Strand | - |
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| Start bp | 142458 |
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| End bp | 144089 |
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| Gene Length | 1632 bp |
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| Protein Length | 543 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 643641288 |
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| Product | ABC transporter substrate binding protein (oligopeptide) |
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| Protein accession | YP_002539585 |
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| Protein GI | 222102546 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATGACGC TTCGCCGCAC TTTTCTTGGC CTCAGCCTCG CGCTGGCCGC TTCTGTAAGC
CTATCGACCA TCGGCCATGC ATCTGATGCG CCGGTCAAGG GCGGAACCTT GGTCTATCTT
GAGCAGCAGG CGCATACCAA TCTTTACCCA CCAGCAGGCG GCTTTTACCC CAACAGCGGC
ATTCTCAACC AGATCACCGA TAAGCTGACC TATCAAAACC CCAAGACACT GGAAATCGAG
CCGTGGATTG CCGAGAGCTG GACGGTCAAT GCCGATAACA CGGAATATAC CTTCAAAATC
CGCCCCGGCG TGACGTTCTC CGATGGCTCC CCGGTGGACG CCAATGCGGT GGCCAAAAAC
TTTGATCGCT TCGGGCTTGG CGATAAGGGT TTGAAGCAGC CGGTTTCGGA AGTGGTCAAC
AATTACGACC ACAGTGAAGT GATTGACCCG CTGACGGTGA AATTCGTGTT CAAAAAGCCG
TCGCCGGGCT TTCTTCAGGG AACATCCGTT ATCGGCTCCG GTCTGTTGTC GTTGAAAACA
CTCTCCCTGC CCTTTGAGCA ATTGGGCGAT GCCACCAAAA TCATCGGCTC CGGCCCCTTT
GTGGTCAGCG CCGAGACGCT TGGCAAATCG CTCGATTTGA AAGTGCGGGC CGATTACACT
TGGGGTCCGA AAAAGCTGGA GCATCAGGGC CGCGCCTATC TCGATGGCAT CAAATATATC
ATCACCCGTG AAGATGGCGT GCGCATTGGC GCGCTTCTGG CCGGTCAGGC CGATCTGATC
CGCCAGATTC AGGCCTATGA TGAGGCACAG GTTGAAACGC AGAATTTCAA GATTTATGCG
CCCGGCACCC GCGGCGTGAA CAATTCGGTG GTGTTCAGAC CAGACAATCC GTTGGTTGCT
GATGTGCGGG TGCGCAAGGC GCTGTCTTTG GCCACCAACC GCGATGAAAT CATCAAGACC
CTATTCTCCA AGAACTATCC ACGCGCCACC TCCATCATCG CCTCCACGGC CATTGGCTAT
GTCGATCAAT CCGACAAATT GGGCTTTGAT GTTGAGAAGG CCAAGGCTCT GCTGGATGAA
GCCGGATATA AGCCAGATGC CGATGGCATT CGTGCCAAGG ACGGGGCAAA ACTGGTGCTG
ACAGCCTATG AATCCCTGCC GCAACCGCAA AACCGCGCGG CTTTGCAGCT GATTGCCCAG
CAATGGCAAA AAGTGGGCGT GAAGCTCAAC GTGCTGGCCG GCGACGCGGG AAGCGCCGCT
TTGGATGATC TTGATCCGCT GAAAACCCCG GTGACTCCTG CCATCGTTGG TCGCGCCGAC
CCGGATGTGA TCAAGAGCCA ATATTACCCG AAAAACCGCG ACGCGCTGCG TCAGAAGGGT
GGTCTCAGCG ATAAAGCCAA GACCTTTGTT GATGATAAGC TCAATAGCTT ACTGGAGGAG
ATCAGCTCTC AACCTGATCC ACAGAAGCGA TTGAAGGTTG TGGCAGAGGT ACAGGCCTAT
GTGCTCGATC AGGCCTATGC CATCCCGATT TTTGAAGAGC CGCAAGTCTT TGCCGGAGCG
CCTTACGTGA AGGGTGTGGC TTTTGATGCC GTGGCCCGCC CCAGCTTCTA CAGCGTCTGG
CTGGATAAGT AA
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| Protein sequence | MMTLRRTFLG LSLALAASVS LSTIGHASDA PVKGGTLVYL EQQAHTNLYP PAGGFYPNSG
ILNQITDKLT YQNPKTLEIE PWIAESWTVN ADNTEYTFKI RPGVTFSDGS PVDANAVAKN
FDRFGLGDKG LKQPVSEVVN NYDHSEVIDP LTVKFVFKKP SPGFLQGTSV IGSGLLSLKT
LSLPFEQLGD ATKIIGSGPF VVSAETLGKS LDLKVRADYT WGPKKLEHQG RAYLDGIKYI
ITREDGVRIG ALLAGQADLI RQIQAYDEAQ VETQNFKIYA PGTRGVNNSV VFRPDNPLVA
DVRVRKALSL ATNRDEIIKT LFSKNYPRAT SIIASTAIGY VDQSDKLGFD VEKAKALLDE
AGYKPDADGI RAKDGAKLVL TAYESLPQPQ NRAALQLIAQ QWQKVGVKLN VLAGDAGSAA
LDDLDPLKTP VTPAIVGRAD PDVIKSQYYP KNRDALRQKG GLSDKAKTFV DDKLNSLLEE
ISSQPDPQKR LKVVAEVQAY VLDQAYAIPI FEEPQVFAGA PYVKGVAFDA VARPSFYSVW
LDK
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