| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_7174 |
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| Symbol | dppB |
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| ID | 7380339 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011981 |
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| Strand | - |
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| Start bp | 141451 |
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| End bp | 142395 |
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| Gene Length | 945 bp |
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| Protein Length | 314 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 643641287 |
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| Product | ABC transporter membrane spanning protein (dipeptide) |
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| Protein accession | YP_002539584 |
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| Protein GI | 222102545 |
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| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.281542 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGACGCGAT ATGTTGCAAG CCGGATAGGA CAGGCGGTTC TGGTGCTCTG GGCAGCCTTT
ACCCTGTCCT TTATTCTGTT GCAGGCCATG CCTGGGGACG CGGTGCTGAT CAAGTTTCTC
AGCCCTGATT ATGGGTTAAG CCCTGATCAA ATCAAGGAAA TTCGCGCCGC CTATGCCGTG
GATTCCTCTG TGTTCGTCCA ATATTTCCAC ACATTGGCGA ATTTCTTACA GGGTGATTTT
GGCTATTCGC TGCACGCGGG CGTGCCGGTG ACGGCGCAGT TGGCCATAGG TCTGCCTGCA
ACGCTCACGC TGGCAGCTCT CGCCTTTCTT GCTGCCATCG TCCTTGCGGT CTTTGTGGCG
GTGCTGTCTT CGCTCGCACC ATTTTCATTT TTGCGCAATC TGGTACAGGC AGTGCCTTCG
CTGTTGATCT CGGTTCCAGT GTTCTGGCTG GGCATTATGC TGATCCAGAT TTTCTCGTTT
CGGCTCAAGC TGGTCTCGGT GATCAATCCC GGACCATGGG AAAGTCTCGT CCTGCCGGTG
ATCACCCTGT CTGTTCCCAT TGCCGCACCG CTGGCGCAAA TCCTGATCCG CAATATTGAT
GAAATCCGCA CCCGGCCCTT CATCTCTGTC GTCATTGCCA AGGGGGCCAC GCCCGCCCGT
GTGCTGTGGC GGCATGTCGC CATCAATGCG GCTTTGCCAG TGCTGACCAT TGCCGGGGTG
CTGTTTGGCG AGCTTCTGGC CGGAGCCGTG GTGACCGAAA CCGTATTTGG CCTGAACGGC
CTAGGCGAAT TGACGGAAAA AGCCGTCAGC ACGCAGGATA TTGCCGTGCT TCAGGCCATT
GTGGTGATTT CCGCCACCGC CTTTGTCATC ATCAATCTTC TGGTCGATCT TGCCTATCCC
CTTCTCGATC CCCGCCTGAG AAGCCGGAAC GGAGCCGCAT CATGA
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| Protein sequence | MTRYVASRIG QAVLVLWAAF TLSFILLQAM PGDAVLIKFL SPDYGLSPDQ IKEIRAAYAV
DSSVFVQYFH TLANFLQGDF GYSLHAGVPV TAQLAIGLPA TLTLAALAFL AAIVLAVFVA
VLSSLAPFSF LRNLVQAVPS LLISVPVFWL GIMLIQIFSF RLKLVSVINP GPWESLVLPV
ITLSVPIAAP LAQILIRNID EIRTRPFISV VIAKGATPAR VLWRHVAINA ALPVLTIAGV
LFGELLAGAV VTETVFGLNG LGELTEKAVS TQDIAVLQAI VVISATAFVI INLLVDLAYP
LLDPRLRSRN GAAS
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