| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_7108 |
|---|
| Symbol | |
|---|
| ID | 7380158 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011981 |
|---|
| Strand | + |
|---|
| Start bp | 90249 |
|---|
| End bp | 91325 |
|---|
| Gene Length | 1077 bp |
|---|
| Protein Length | 358 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 643641236 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002539533 |
|---|
| Protein GI | 222102494 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1080] Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTATGAGC AAAAGAGCGA TCTTAAGTCT GCAAACCTGA TGGACGCCAC ACGGCTTCTG
TCATGGGTGC GGCACAACGC AGCACCGTTG TTTTCCGGCG CTGCGCGGTC GGCATTTATT
GCGACTTCTA TTCTGAGGGT CCTTGCACGT ACCGGTTATA TCCACGAAGC CGTGATTGAG
GATATCTCCC GTAGCGCGCA GGCGATTGGT TCGGAACTGG TTCGCGATTT CCAGAGACTG
GAGCGCGACG TCTTCATGGC GCGATACGGG CATATTCGCC CGGGAACCTT CGACATCACC
GTGCCGCGAT ACGATCAAGA ACCGGAGAAG TATTTTTCAT TTCTTGATGC CACCCAAGCG
CAACCCGACG TGCGAGACAC AGGAAGCTTT GTAGAGCTTT CGGCGAGTGA CATCGCGCGG
ATTGATGCGC ATTTCGCCGC GCTTGGATAC AACTTTAACT GGGCGCGCTT CCGCACTTTT
GCAGCGAGTG CCATTCATGC GCGGGAATAT GTAAAGTTTC TCTACACAAA ACAGGTTTCA
GATGCGCTTG AAATCATTTC GAATGTCGGG GTGCAGTACG GTTGCAACAG GGAAGAGATG
TCGTTTCTAA CGCTCTCGGA TATCGAGAAC ATGCTCGACT TCACATCCGA CATAGACCGG
CGGATCCGCG AAATCTCGGC GTCGAACCGG GTCTCGTGGC AGCAGAGCCT GCCGGTGCGA
TTGCCTGATT TGCTGACCTC ACCTGACGAT ATTTTCGGTT TTGAGGTGGA AGCTTCGGCA
CCAAATTTCG TGACCTATGA AACGGTTCAG GCCCCGGTCG CGCTGTCTCT CGACAATGAC
CTGAGGGGCA AGATCGTGTT CATCGAAACC GCTGATCCGG GATACGATTG GGTGTTTACT
CGAGGTATTG CGGGTTTCAT CACGCGATAT GGAGGCGAGA ATTCTCATAT GGCGATCCGT
GCTCGTGAAT TCGGGATTCC GGCGGTGGTT GGGGCCGGGC GGCATTATGA CAAATGGAAG
ACCTTTTCGG TGTTGCGGTG TGATTGCCGC GCCCGTCGGG TTGAGCCAAT CATATGA
|
|---|
| Protein sequence | MYEQKSDLKS ANLMDATRLL SWVRHNAAPL FSGAARSAFI ATSILRVLAR TGYIHEAVIE
DISRSAQAIG SELVRDFQRL ERDVFMARYG HIRPGTFDIT VPRYDQEPEK YFSFLDATQA
QPDVRDTGSF VELSASDIAR IDAHFAALGY NFNWARFRTF AASAIHAREY VKFLYTKQVS
DALEIISNVG VQYGCNREEM SFLTLSDIEN MLDFTSDIDR RIREISASNR VSWQQSLPVR
LPDLLTSPDD IFGFEVEASA PNFVTYETVQ APVALSLDND LRGKIVFIET ADPGYDWVFT
RGIAGFITRY GGENSHMAIR AREFGIPAVV GAGRHYDKWK TFSVLRCDCR ARRVEPII
|
|---|
| |