| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_7074 |
|---|
| Symbol | |
|---|
| ID | 7380131 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011981 |
|---|
| Strand | - |
|---|
| Start bp | 65523 |
|---|
| End bp | 66239 |
|---|
| Gene Length | 717 bp |
|---|
| Protein Length | 238 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 643641210 |
|---|
| Product | transposase |
|---|
| Protein accession | YP_002539507 |
|---|
| Protein GI | 222102468 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG3316] Transposase and inactivated derivatives |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCCAAA CCGTTCGTGA TCCCCTTTAT CGCCGCCACC GGTTCCCAGC TGAAGTGATT
GCTCATGTCG TCTGGCTTTA TCTTCGTTTC CCGCTCAGCT TGCGGATGGT CGAAGACTTA
CTGGCGGCGC GCGGGATTAT TGTCTCGCAC CAGACAGTCC GCCTTTGGGC CGAGAAATTC
GGTCGCCGCT TTGCCAATGA AATCCGGCGG CGTTCAGCCG GAAAGCTTGG CGACAAATGG
TATCTCGATG AAGTCGTCAT CTCCATAGGC GGCAAGAAGC ACTGGCTGTG GCGAGCCGTC
GATCAGGATG GCTTCGTTCT CGATGTGCTG GTGCAGAGCC GCCCTAATAC CAAGGCCGCC
AAACGTCTGA TACGAAAGCT TCTGAAAGGA CAGGGTCAAG CACCGAGAGT GATGATGATC
GACAAACTCG GATCCTACGG CGCGGCCAAA CGCGACATCA TGCCCGGCGT CGAACACCGT
TCACACAAGG GATTGAATAA CCGGGCGGAG AATTCACATC AACCGACACG ACGGCGAGAG
CGCATCATGA AGGGCTTCAA ATCAGCTCGA CATCTCCAGC GTTTCGTCTC CATCCATGAC
CCGGTCGCAA ATCTCTTCCA CATTCCACGC CACGATATCC TGTCCCACCA TCACCGTGAA
CTGAGAACCG CAGCCATGCA AATGTGGAGT GAATTCGCGC GCCTGCAGGC TGCGTGA
|
|---|
| Protein sequence | MTQTVRDPLY RRHRFPAEVI AHVVWLYLRF PLSLRMVEDL LAARGIIVSH QTVRLWAEKF
GRRFANEIRR RSAGKLGDKW YLDEVVISIG GKKHWLWRAV DQDGFVLDVL VQSRPNTKAA
KRLIRKLLKG QGQAPRVMMI DKLGSYGAAK RDIMPGVEHR SHKGLNNRAE NSHQPTRRRE
RIMKGFKSAR HLQRFVSIHD PVANLFHIPR HDILSHHHRE LRTAAMQMWS EFARLQAA
|
|---|
| |