| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_7030 |
|---|
| Symbol | |
|---|
| ID | 7380227 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011981 |
|---|
| Strand | - |
|---|
| Start bp | 28572 |
|---|
| End bp | 30185 |
|---|
| Gene Length | 1614 bp |
|---|
| Protein Length | 537 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 643641175 |
|---|
| Product | ABC transporter substrate binding protein (oligopeptide) |
|---|
| Protein accession | YP_002539472 |
|---|
| Protein GI | 222102433 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4166] ABC-type oligopeptide transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.394274 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGAGAAAAC TTCTTTTGCT GACAACCTGT CTGGCCTTTT CATTTTCCAG TCTTTCCTAT
GCTGACGCCG GCACGAAGAA TGGCGAGAAG CTAGCAGCAA ACCAGACTTA TACCTATAGG
GTACTGGATT CTTTCAAGAC GCTGGACCCG CAATTAAATG CAGACACGGA TGGGTCTGAC
GCTCTTCGCA ATCTGTTTGA AACTCTGATG AATGAGGATA CGCAGGGCAA TCTGGTTCCC
GGCGCAGCAT CAAGCTACGA TGTATCGAGC GATAAGATGC TCTACACATT CCATCTGCGG
CCCGAGGCAA AATGGTCCGA TGGCACGCCC GTCACCGCAG GCGATTTTGT TTACGCTTGG
CAACGGCTGG CCGATCCCAA GACAGCCTCT GAATATGCCT CCTATCTTGA AATGATGCAG
GTGGAAAACA CCACAGACAT CATTGGCGGC AAGAAGCCGC CGCAGGAGCT GGGCGTGAAG
GCCGTGGATG ACCATACATT TCAGGTCAAG CTGATCGCAC CCATTCCTTA CTTCGTGAAG
ATGACGGTGA ATGCCTCGAT GTCCCCGGTC AAGAAATCGG TGATCGATAA GTTCGGCGAC
GACTGGACCA AGCCGGGCAA TCTGGTTGGC AACGGCGCCT ATGTTTTGAC CGAGCATGTT
CCCGGCGAAA AGCTGGTGAT GAAGCGCAAC CCGAACTATT GGAACAACGC CAATACCGTG
CTCGACACGG TCACAGCTCT GATTATCAAC GATGGCAATC AGGCCATGAC CCGTTATCTT
GCCGGGGAAC TTGATGAAGT CGGTATTCCT ACCGGTCAGT ATCCGCGCAT GAAGAAGGAT
TATCCGGATC AGGCGAAATC CACACCAAGG TCCTGCACCT ATACCTACCT CTTCAATGTC
TCTGAAAAGG GACCGGCAGC CCTGAAAGAT GTCCGCGTGC GGCAGGCTCT GTCCTACGCC
ATCAACCGCG ATGTGATCGT CAACAACATT CTCCAGGGCG GCCAGAAACC GGCTTATAAC
TGGGTGCATT GGGCCACCGC TGGTTTCAAG ATGCCGGATA TTGCTGCCGC GCATATGACC
CAGAAAGAGC GGGACGACAA AGCGGTCGCG CTTCTGAAAG AAGCTGGCTA TAGCCCTGAC
CATCCGCTCA ACCTGACACT GAGCTACAAC ACGGATGAAG GCCACAAGAA GATTGCCATT
GCCGTATCAC AGTTCTGGAA GAAAGTTGGC GTCAACCTCA CCTTGACCAA TATGGAATGG
AAGGTTCTGA CCGATAAGCT GAACCATCAG GATTTTGAAG TGTCGCGCTA TGCATGGTGC
GGTGATTACA ATGAGGCTTC GACCTATCTG GATGTCTTCA CATCCGCCTC CGGCAACAAC
TATGTCAAAT ATTCCAATCC GGCCTATGAC AAGCTGTTGA AAGAAGCAAA GACCGCAGCC
GATCCGCAGC CGCTTTACAC CAAGGCCGAG GAAATTCTGG CGGTAGATGC GCCCCATGCG
CCGATCTATC AATATTCCAA CGTGATGATG CTGAAGCCGG ATGTTCGGGG TTACCCTGAA
AAAAGCGTGA TGGGCAACTG GTACGCCAAA GACATGTACC GCGTGGCCAA ATAA
|
|---|
| Protein sequence | MRKLLLLTTC LAFSFSSLSY ADAGTKNGEK LAANQTYTYR VLDSFKTLDP QLNADTDGSD
ALRNLFETLM NEDTQGNLVP GAASSYDVSS DKMLYTFHLR PEAKWSDGTP VTAGDFVYAW
QRLADPKTAS EYASYLEMMQ VENTTDIIGG KKPPQELGVK AVDDHTFQVK LIAPIPYFVK
MTVNASMSPV KKSVIDKFGD DWTKPGNLVG NGAYVLTEHV PGEKLVMKRN PNYWNNANTV
LDTVTALIIN DGNQAMTRYL AGELDEVGIP TGQYPRMKKD YPDQAKSTPR SCTYTYLFNV
SEKGPAALKD VRVRQALSYA INRDVIVNNI LQGGQKPAYN WVHWATAGFK MPDIAAAHMT
QKERDDKAVA LLKEAGYSPD HPLNLTLSYN TDEGHKKIAI AVSQFWKKVG VNLTLTNMEW
KVLTDKLNHQ DFEVSRYAWC GDYNEASTYL DVFTSASGNN YVKYSNPAYD KLLKEAKTAA
DPQPLYTKAE EILAVDAPHA PIYQYSNVMM LKPDVRGYPE KSVMGNWYAK DMYRVAK
|
|---|
| |