| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tgr7_3175 |
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| Symbol | |
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| ID | 7317405 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thioalkalivibrio sp. HL-EbGR7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011901 |
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| Strand | - |
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| Start bp | 3322993 |
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| End bp | 3324876 |
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| Gene Length | 1884 bp |
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| Protein Length | 627 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 643618074 |
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| Product | sensory box protein |
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| Protein accession | YP_002515231 |
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| Protein GI | 220936332 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTGCATT CACACCCCAG CGCGTCCGAT GACGGTGCGG GCGAGTCCCC GGACCGCCTG
TTCGACCAGC TCGTCGGCAC CCTGGGCGAG CTGTCGCGCC AGCTGGACTT CTCCGTGTTC
TTCGAGCGCG CCGCCCGGGC GGCGGCGGAC CTGCTGGGTG CCGACGGCGC CGCCCTGATC
GTGCTGGACG GCAGCTGCCA CCTGCAGTAC CGCTTCTTCA TCGGCCTGCC GCCCCAGTAC
GAGGCCCGCT ACCGCAATCA CCGCTTTCCC GCGCATATGG GCACCTCGGG CCAGGCGCTG
CGCAGCGGCC GGCCGGTGTT CTGCCAGGAC TACGCCGCCA GTGACCAGGC CATGCCCGAG
TACGTGGCCG CGGGCCTGAA GTCCAATCTG GTGGTGCCGG TGTTCGCCGG CGACATGCCG
GTGGGTGTGC TGGCCATCTC CTGGTTCAGC CATCGCGCGC CCGAGTCCCT GGAACGCCGG
CGCGTGGCGA TGGTGGAGGT CCTGGCCGGG CTCATCGGCA CGGCATTTCA TCGCCTGCGC
CTGGAGCAGG AGCTGGAGAC CCGCGCCCTC TATGACGCCC TCACCGGTCT GCCCAACCGC
AGCAAGCTGT TCGCACGCCT GGAGCATGCC CTGTACCAGT CACGCCAGGC GGAGCGTCTC
ACGGCGGTGA TGGTCATGGA CCTGGACGGC TTCAAGCAGG TCAACGACCG TCTCGGTCAC
CAGGTGGGCG ACCGGTTGCT GCAGGACGTG GCCGGGCGCC TGCGGGACGT GGTGCGCCGT
TCCGACATGG TGGCGCGCCT GGGCGGTGAC GAGTTCGTGG TGCTGGTGGA GAACTGTGCC
AGCGTGGCGG AGATCGAGCA CGTGGCCGGG CGCCTGGTCA CGGCGCTCAA TTTCGGCGTC
GGCATGGGCG GCAACCTGGC GCTGCGCATC ACCGCCAGCG TGGGCATCAC GGTCTATCCC
TTCGACGATG CCGCGCCCGA GGCCCTGCTG AGCCACGCCG ACGCTGCCAT GTACGAGGTC
AAGAAGACCG GCGGCCAGCG CTATGGCTAC TTCGACGCCC AGTTGCACCG GCGCATCCAC
GACCGCCAGC ACATTGAGCT GGAGGTACGC AGGGGTCTGG AGGAGGGCGA GTTCAGGCTG
GTGTTCCAGC CGGTGGTGGA TGCCCAGACC GGCCGGGCGG TGGGTGCCGA GGCCCTGGTG
CGCTGGGCGC ATCCCGAGCA GGGCCTGCTG GGGCCGGGAC AGTTCCTGCC CCAGATCGAT
GGCACCGCCG TCAGCGCCCG CCTGGGCGCC TGGGTGCTGC GCCATGCGGT GGCGACGCTG
GCGGACTGGG AGCGGCGCGG CCTGGGACTG TGGCTGAGCG TAAACGTGGA CGGCCATGAG
CTGGAAGGAC ACGGCTTCGC CTCGCGCCTG CGGGAGATGC TGCGCGAGCA TCCCGACTGC
GACCCGTCGC GGCTGAAGAT CGAGATCGTG GAGAGCACGG TCATCAACGA CTTCGACAAG
GTGGGCCGGC TCATCGAGGA ACTGGCGGAG CTGGGCGTGC GCTTCGTGCT GGACGACTTC
GGCACCGGCT ACGCCTCCAT CGCCTACCTG CGCCGCCTGC ACATCCAGGC CATCAAGATC
GACCGGGGTT TCGTCGCCGC CATGGAGGAT CCCGGCGAAC GCGCCCTGGT GGGTTCCCTG
ATCCAGATCG CATCCACCCT GTTCGTGGAA TGCGTGGCGG AGGGGGTGGA GACCGCCGAG
CAGCGCGCCA CCCTGCTGGG CATGGGCTGC CGGCTGCTGC AGGGTTATTA CCTGGCCAGG
CCCATGTCCG CCGATGACTT CCTGGACTGG CTGGCCGGCG GGCACCGTCT GCGCCTGGTG
CCGGTCAGCG ATGCGCCCGG TTGA
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| Protein sequence | MVHSHPSASD DGAGESPDRL FDQLVGTLGE LSRQLDFSVF FERAARAAAD LLGADGAALI
VLDGSCHLQY RFFIGLPPQY EARYRNHRFP AHMGTSGQAL RSGRPVFCQD YAASDQAMPE
YVAAGLKSNL VVPVFAGDMP VGVLAISWFS HRAPESLERR RVAMVEVLAG LIGTAFHRLR
LEQELETRAL YDALTGLPNR SKLFARLEHA LYQSRQAERL TAVMVMDLDG FKQVNDRLGH
QVGDRLLQDV AGRLRDVVRR SDMVARLGGD EFVVLVENCA SVAEIEHVAG RLVTALNFGV
GMGGNLALRI TASVGITVYP FDDAAPEALL SHADAAMYEV KKTGGQRYGY FDAQLHRRIH
DRQHIELEVR RGLEEGEFRL VFQPVVDAQT GRAVGAEALV RWAHPEQGLL GPGQFLPQID
GTAVSARLGA WVLRHAVATL ADWERRGLGL WLSVNVDGHE LEGHGFASRL REMLREHPDC
DPSRLKIEIV ESTVINDFDK VGRLIEELAE LGVRFVLDDF GTGYASIAYL RRLHIQAIKI
DRGFVAAMED PGERALVGSL IQIASTLFVE CVAEGVETAE QRATLLGMGC RLLQGYYLAR
PMSADDFLDW LAGGHRLRLV PVSDAPG
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