| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tgr7_3153 |
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| Symbol | |
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| ID | 7317383 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thioalkalivibrio sp. HL-EbGR7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011901 |
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| Strand | - |
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| Start bp | 3300513 |
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| End bp | 3303041 |
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| Gene Length | 2529 bp |
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| Protein Length | 842 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 643618052 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_002515209 |
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| Protein GI | 220936310 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.256561 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTGGCTGG GCCTGGTGGT TGCGTCGTTC GCGGCCGATG CCCGGGAGGT GCGGGTGGGC
GTCTATGACA ACGCGCCCAA GCTGATGCTG GAGGCCGACG GCACGATCAC CGGCATCCTG
GGGGATCTGC TCCGGGAGAT CGCGCAGGAA GAAGACTGGC GGCTGGTCCC GGTGCCCTGC
GAGTGGTCCC GGTGCCTGGA CCTGCTCAGC CGGGGCGAGC TCGACCTGCT GCCCGATGTG
GCCTACAGCG ACGCGCGGGC CGCGCGCATG GATTTTCACC GGGTGCCCGC CCTGTACAGC
TGGTCCCAGG TCTACCAGAG GCCGGGGCAG CGTATCGATT CCATGCTGGA TCTGGAGGGG
CGTTCCCTGG CGGTGCTGGA GGGCTCCATT CAGCAAGGTT ACCTGATGGA CCTGCTGGAC
AATTTTGGCG TGCGCGTCTC CTGGCTGCCG GTGCAGACCC TGCAAGAGGG TTTCGACAGG
GTGATCAGCG GTGAGGCCGA CGCCGTGGTG GCCAACCATC GCTTCGGTGA CCAGCGCGCC
CTGGAGATGG GCTTGCGGGT CACGCCCATC ATGTTCCAGC CGGTACAGTT GTTTTATACC
GTCCCCAGGG GGCGTAACGC CGATCTGCTG GCGCGCATCG ATGCCCACCT GACTCACTGG
AAGGACACCC CGGGTTCGAC CTATTTCGAC ATCCTGCGCA GCTGGGGCTT CGAGCACACC
GAGACACGCA TCCCGGAGCA TCTGTGGTGG GGTCTGGCGG GCCTGCTGGC GGCCCTGGGG
CTGGCCTTGC TGTTCAGCCT GTTCCTGCGC CTGCAGGTCA ACGAGCGCAC CCGCCAGTTG
CGCGCCAGCG AGGAGCGCCT GTCCACCATC CTCAACAGCG TCGAGGCGTG CATCTACATC
AAGGACACGG AGCTGCGTTA CCAGTACGCC AACCGCAAGG TCTGCGAGCT GTTCGGTGCC
TCGCCGGAAC GCATCATCGG CCGCCGGGAC GCGGACTTCT TCGATGCCGA GACCGCCGCC
AGGCTGGAAC AGAACGATCG CCTGGTGCTG GAGCGCGGCG AGCGCTTCGC GGAGGAAGAG
CACAATCGCA CCCGCGATGG CCGGCACGTG AACACCTTCC TGACGGTGAA GCTCCCCCTG
CGTCGTGCGG ATGGCCACAT CTACGCACTG TGCGGCATTT CCACCGACAT CAGCGAACAG
AAGAAGATCC TGGAAGAGGT GCACCAGCTG GCCTTCTTCG ATCCGCTCAC CGGCCTGCCC
AACCGCCGCC TGCTCATCGA CCAGTTGCGC CACGCCCTGG CCAATTGCGA CCGCACCGGT
CACGAGGGTG CGTTGCTGTT CATCGATCTG GACAACTTCA AGAATCTCAA CGACACCCTG
GGTCACGACA TGGGCGACCT GCTGCTGCAG CAGATCGCCG AGCGGCTGCG CGAGCATGTG
CGGGAGAATG ACTCCCTGGC ACGCCTGGGT GGCGACGAAT TCGTGGTGAT GCTGGAAGGG
CTGCAGCCCG AGGGCGGCGA GGCGGTGCAC CAGGTGCGCC ACGTGGGTGA GAAACTGCTG
GGGGTGCTGA GCGAACCCTT CAGCCTGGAC CGGGTGGTCT ACCGCATCAC CGCCAGCATC
GGCGTGGCCA TGTTCAGCGA CAGCGATGAC ACGGTGGAAG AGCTGCTCAA GCGCGCGGAC
CTGGCCATGT ACGAGGCCAA GTCCGCCGGG CGCAACGGCC TGCGGTTCTT CAATCCTTCC
ATGCAGGCGG CGGTCAGTGC TCGGGCGGCG CTGGAAGCGG ATCTGCGCGA GGCCTTGCAG
ACGGAGCAGT TCTTCCTCGA ACTACAGCCC CAGGTGGATG CGGCCGGGAC GGCCGTGGGC
GCCGAGGCGC TGCTGCGCTG GCGTCATCCC GAGCGGGGTC TGGTCTCGCC GGGCGAGTTC
ATCCCGGTGG CCGAGGCCAC CGGGATGATC CTGCCCCTGG GCGACTGGGT ACTGCGGCAG
GCCTGTGCCC AGCTGGCGGC CTGGTCACGC GATCCCGCCA TGGTTGGGCT GGTGTTGTCC
ATCAATGTCA GCGTGCGCCA GTTCCGGCAC CCGGATTTCG TCTCCCGGGT GCTGGACGTG
CTGGAAGACA GCGGCGCGGA TCCGCGCCGG CTGGAGATGG AGCTCACCGA GAGCCAGCTG
GTGGACAACG TGGAAGAGAT GATTGGCATC ATGATGCGAC TGCGCGCCCG GGGCGTGCGT
TTCTCCCTGG ACGACTTCGG CACCGGCTAT TCGTCCCTGT CCTATCTCAA GCGCCTGCCC
CTGAATCAGC TCAAGATCGA CCAGTCCTTC GTGCGCGACC TGCTGGTGGA CAGCAACGAC
GAGGCCATCG TGCGCACCGT GGTGGCCCTG GGCGAGAGCC TGGATCTTCG GGTGATCGCC
GAGGGCGTGG AGCGCGAGGC CCAGCGGGAC AAGCTGCTGG CCCTGGGCTG CCGCTATTTC
CAGGGCTACC TCTATGGTCG CCCGGGGCCG GCGGGCGCGT TGTCCCGATG CGTCGCCCGG
GAGGCCTGA
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| Protein sequence | MWLGLVVASF AADAREVRVG VYDNAPKLML EADGTITGIL GDLLREIAQE EDWRLVPVPC
EWSRCLDLLS RGELDLLPDV AYSDARAARM DFHRVPALYS WSQVYQRPGQ RIDSMLDLEG
RSLAVLEGSI QQGYLMDLLD NFGVRVSWLP VQTLQEGFDR VISGEADAVV ANHRFGDQRA
LEMGLRVTPI MFQPVQLFYT VPRGRNADLL ARIDAHLTHW KDTPGSTYFD ILRSWGFEHT
ETRIPEHLWW GLAGLLAALG LALLFSLFLR LQVNERTRQL RASEERLSTI LNSVEACIYI
KDTELRYQYA NRKVCELFGA SPERIIGRRD ADFFDAETAA RLEQNDRLVL ERGERFAEEE
HNRTRDGRHV NTFLTVKLPL RRADGHIYAL CGISTDISEQ KKILEEVHQL AFFDPLTGLP
NRRLLIDQLR HALANCDRTG HEGALLFIDL DNFKNLNDTL GHDMGDLLLQ QIAERLREHV
RENDSLARLG GDEFVVMLEG LQPEGGEAVH QVRHVGEKLL GVLSEPFSLD RVVYRITASI
GVAMFSDSDD TVEELLKRAD LAMYEAKSAG RNGLRFFNPS MQAAVSARAA LEADLREALQ
TEQFFLELQP QVDAAGTAVG AEALLRWRHP ERGLVSPGEF IPVAEATGMI LPLGDWVLRQ
ACAQLAAWSR DPAMVGLVLS INVSVRQFRH PDFVSRVLDV LEDSGADPRR LEMELTESQL
VDNVEEMIGI MMRLRARGVR FSLDDFGTGY SSLSYLKRLP LNQLKIDQSF VRDLLVDSND
EAIVRTVVAL GESLDLRVIA EGVEREAQRD KLLALGCRYF QGYLYGRPGP AGALSRCVAR
EA
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