| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tgr7_3035 |
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| Symbol | |
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| ID | 7315963 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thioalkalivibrio sp. HL-EbGR7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011901 |
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| Strand | + |
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| Start bp | 3182021 |
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| End bp | 3183880 |
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| Gene Length | 1860 bp |
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| Protein Length | 619 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 643617932 |
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| Product | RNA polymerase, sigma 70 subunit, RpoD |
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| Protein accession | YP_002515091 |
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| Protein GI | 220936192 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATCACG CAGAACAGCA GTCACGCCTC AAAGAGCTCA TCGCCAAGGG CAAGGAGCAG
GGCTTCCTGA CCTACGCCGA GGTCAACGAT CACCTGCCCG ACACCATCGT CGATCCGGAG
CAGATCGAAG ACATCATCGC CATGATCAAC GACATGGGGA TCGCGGTGCA TGAGCAGGCG
CCGGACAGCG ACAGCCTGAT CCTCTCCGAC AGCACCGTCT CCACCGACGA GGACGCCGCC
GAGGAGGCCG CCGCCGCGCT GGCCTCCGTG GACAGCGAGT TCGGCCGCAC CACCGACCCG
GTGCGCATGT ACATGCGCGA GATGGGTACC GTGGAGCTGC TGACCCGTGA AGGCGAAATC
AAGATCGCCA AGCGCATCGA GGACGGCCTC GGCCAGGTGC TGTTCGCGCT CGCCCACTAC
CCCCAGTCCA TCAGCACCCT GCTGGCCGAG TTCGACAAGG TCGAGGCCGG CGAGATGAAG
CTCACCGACC TGGTGGTCAG CTTCATCGAC CCCAACGCCG ATGACGTGCC CGCCGTTGCC
GCCAATGAGG CCGACAGCGC GGACACCGAC GCCAGTGCCA GCGACGACGA CAGCGATTCC
GACAGCGACG ACGAAGACGA CGACGACACC GCCAGCGAGC CCGAGGACAC CGGCCCCGAT
CCGGAAGAGG CCCGGGAGCG CTTTACCAAA CTGCGCGCCA TGTACGAAGA GGCCATGGGC
TTCGCCGCCA AGAAGCACAC CGCCAAGTAC CGCAAGGTGC GCGAGGAGAT GGCCAGCTAC
TTCATGGAGT TCAAGCTGCT GCCCCGCTTT GTGGACCAGT TGACCGCCGA CCTGCACGAG
ATGGTGGAGC GCATCCGCAT GCAGGAGCGC ACCGTGATGG ACATCTGCGT CAACCGCTGC
AACATGCCGC GCAAGGAATT CATCACCGCG TTCCCCGAGA ACGAGACCAA CCTCAAGTGG
CTGGACACCC AGACCAAGGG CAAGTCCAAG CACGCCAAGC TGCTGGCCGA GCACAAGGAC
GAGATCCTGC GCATCCAGAA GAAGCTGGTG GCTATCGAGG ACGAGTCCAA CCTCACCATC
AGTGAGATCA AGGACATCAA CCGCCGCATG TCCATCGGCG AGGCCAAGGC ACGCCGCGCC
AAGAAGGAGA TGGTGGAGGC CAATCTGCGC CTGGTGATCT CCATCGCCAA GAAGTACACC
AACCGCGGCC TGCAGTTCCT GGACCTGATC CAGGAGGGCA ACATCGGCCT GATGAAGGCG
GTGGACAAGT TCGAATACCG TCGCGGCTAC AAGTTCTCCA CCTACGCCAC CTGGTGGATC
CGGCAGGCCA TCACCCGCTC CATCGCGGAC CAGGCCCGCA CCATCCGCAT CCCGGTGCAC
ATGATCGAGA CCATCAACAA GCTCAACCGC ATCAGCCGGC AGATGCTCCA GGAGATGGGT
CGCGAGGCCA CCCCCGAGGA ACTCTCGGAA CGCATGGAAA TGCCCGAGGA CAAGGTGCGC
AAGGTGCTCA AGATCGCCAA GGAGCCCATC TCCATGGAGA CCCCCATTGG CGATGACGAG
GACTCCCATC TGGGCGACTT CATCGAGGAC GTGAACGTCA TGTCCCCCAT CGAGGCCGCC
ACCCGCGAGG GCCTGTCCGA GGCCACCCGC GACGTGCTCG CCAGCCTCAC CCCCCGGGAG
GCCAAGGTGC TGCGCATGCG CTTCGGCATC GACATGAACA CCGACCACAC CCTGGAAGAA
GTGGGCAAGC AGTTCGACGT CACCCGCGAA CGCATCCGCC AGATCGAAGC CAAGGCCCTG
CGCAAACTGC GCCACCCGAG CCGCTCCGAG ATGCTCAGAA GCTTCCTGGA TCTGGAGTAA
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| Protein sequence | MDHAEQQSRL KELIAKGKEQ GFLTYAEVND HLPDTIVDPE QIEDIIAMIN DMGIAVHEQA
PDSDSLILSD STVSTDEDAA EEAAAALASV DSEFGRTTDP VRMYMREMGT VELLTREGEI
KIAKRIEDGL GQVLFALAHY PQSISTLLAE FDKVEAGEMK LTDLVVSFID PNADDVPAVA
ANEADSADTD ASASDDDSDS DSDDEDDDDT ASEPEDTGPD PEEARERFTK LRAMYEEAMG
FAAKKHTAKY RKVREEMASY FMEFKLLPRF VDQLTADLHE MVERIRMQER TVMDICVNRC
NMPRKEFITA FPENETNLKW LDTQTKGKSK HAKLLAEHKD EILRIQKKLV AIEDESNLTI
SEIKDINRRM SIGEAKARRA KKEMVEANLR LVISIAKKYT NRGLQFLDLI QEGNIGLMKA
VDKFEYRRGY KFSTYATWWI RQAITRSIAD QARTIRIPVH MIETINKLNR ISRQMLQEMG
REATPEELSE RMEMPEDKVR KVLKIAKEPI SMETPIGDDE DSHLGDFIED VNVMSPIEAA
TREGLSEATR DVLASLTPRE AKVLRMRFGI DMNTDHTLEE VGKQFDVTRE RIRQIEAKAL
RKLRHPSRSE MLRSFLDLE
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