Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tgr7_2983 |
Symbol | |
ID | 7318280 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thioalkalivibrio sp. HL-EbGR7 |
Kingdom | Bacteria |
Replicon accession | NC_011901 |
Strand | - |
Start bp | 3122077 |
End bp | 3125511 |
Gene Length | 3435 bp |
Protein Length | 1144 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 643617881 |
Product | Small-conductance mechanosensitive channel-like protein |
Protein accession | YP_002515040 |
Protein GI | 220936141 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3264] Small-conductance mechanosensitive channel |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGCGCCTCC CGTCGAAGAC CTTGCAACGT CTCCTGATCC TAGCCGTTCT GCTGCCCTGG TTCGCGTTCG CCACGGCACA GGACATGAAC GGGGCCGTTG GCCCTGCCAT GCCGGCGGTT TCGCCCCAGC AGCTGCTGGA GCTGCGCGCC ACGCTCCAGG ACAACCGCCC GCGCCTGGTG CAGATGGCGG AGATGATCGA CACCACCCAG GCAGAGGGCT GGCTGGAGGC CAGTCCGGCG TCGCGCTTTG CCGAGCGCAT GGCGGCCACG GCCGAGGACT CCGCGGAGCG TGGCATGTGG CAGGCAGCCA TCGACCTGGA GACGGAAGGG GCCGAGCGTC TGCGCGGCGC CCTGGAACGG GCGGCACTGG CCCGCTCAGC GGGAGAGCGC ATCGACGAGG CCGTGCAGCG CATCACCCTG ATGCTCGGCA CCCAGCCGCG CACCGGTGAC GACACCAGCC TGTCCGCCAT CGAGGCGGAT ATCGCGACCC TGGAGCGGCG TCGCGCCCAG GTGTTGCTGG AGCAGGAACA GAAGCGCCAG ACCCTGGAGC GCCTGGACAC CCAGGCGCGT ACCCAGGCGG AACTGCTGGA GCGCCTGCGC CAGGGGCTCG CGGACGGCCC TGTGGCCATG CCTTGGGGGC CGCTGGAGGA AACGGCACTC TCAGATGCCC TGGCCGCCTG GGAGCAGGCC CAGGCGAGGC GGGCAGAGGC GCGCCTGCTC GCGGCGCAAC TGGACGGGCA GACGGTCGCG CCACGCACGG AGATCCTGCG CCTTGAGCTG CGCGTCCTGG AGACCGAGGT GCAGTGGCTG GCCCAGCGCG TCGCCCAGAT GTCCACCGAG TATGCGGAGC GTTCCGGTGA GGAACTGCGC GCCCTGCGTG ACGATATCCG GCGCCTGACG GAGCGCGAAC CCGAGGCCGC GCAACGCTTC AGCACCGAGA TCGAGGCCCT GCTCAAGCGC ATCGACCGTA TCGCCCAGGT CCAGTCCCGT GTGCGTGCGC TGCAGGTCGA GCGGGAGCGC TACACTCAGC TGGAGGCCGA CCTCACCCAG ACCCTGTCCG GCGTCCGTGA GCGCCTGGAG ATCGGCGGCC TGACCGATGT GCTCGGTGGC CTGCTCATGG AAGAGGAGCG GCGGGTTCGC AAGCTCGCGG ATCTGCGTTT CACGCTGCAC GATCTGGAGC GGGAGCTGGC CCAGTCTCGG CTGCGCGATA TCACCGTGCG CGACGAGTTG CGCGCACTGC CGGCGCCGGC GCCGGTGTTC ATCGATGACC GTGCCCGCTT CGAGATCCTG CGCCTGCAGC GCCAGGTGAT CGAGATCGAG CTGCAATCCG ATGAACAGCT GACCGAACAG CTGCGCAATG CCGAGCTGCG GCTGCGCACC GTGGTGGAGC GCGTGGACGA GTTGACCGAG GTCCTGCGCG AGTCGCTGCT CTGGTGGCCC AGCCATCAAC CCGTCGGGCT GGAGTGGGCC AAGCGCATTC TTCCGGCCAC GCTGATCCTG CTGGACCCCG GTGCCTGGCG CGAGATCCAC AGCGCCCTGT TCTCGGTGAT CTTCGGCGCA CCGGTGGGTA CCCTGCTGAC CCTGCTCCTG GCGGCGCTGC TGTTCCTGGG CGGGCGCGGC ACCCACCAGC AACTGGCGCA GATCGCGGAG AAGACCGCGC ATCCCTTCAG TGATCGCATG GGGTTGACCT TCCAGGCGGT GGGCTGGAGT CTGCTGCGCG TCCTGCCCGT GCCGGTGTTG CTGGCCTCCA CCGGTTATCG CCTGCAGCAG CTGCCGGATA TCGGTCCGGG CGTGGAGGTG TTGGCCGTGG TGCTGTTCGG TGCCGCGCTC TGGTGGCTGG TGGGTCACCT GTTCCTGCTG TTCTCCAGTA GCAAGGGCGT CGGCATGGCC CACTTCCAGT GGGACCCGCT GGTGGTGCGC CGCCTGCGCC GGCACCTGAC CTGGTACATG CCGCTGTTGC TGCTCATGGC GGCGTTCCTG GCCCTGACCT TCGGTCACCC GAACGAGCTG CTGCCCGATG TGTTCGGCCG CATCGGTCTG CTGGCGACGA CCTTCCTGTC CGGCCTGTTC GCCTGGCAGA TGCTGGCACC GAGGACGGAG TCCGAGGCGA CCGAGCAGCA GGAGCGCCGG CGTCGCCTGG TGCGTTTCGC GCTGGCGGCG TTCACCCTGG TGCTGATGGG CCTCACCCTG GCCGGCTACC TGCTCACCGT GGCGGTGCTG CTGGACCGCA CCATCAACAC GGTGATCGTG GTGGCCGCCG TATGGCTGGG CTACAGCTTC GCGACGCGGG CGCTTCTGCT CAGCGAATCC CGACTGGTCC TGCGCCGCAT GCGCGAACAG CGGGAAAAGG CCGCGGCCCT GGAGGGCAGC GCGGCCGTGG GCGAGGGCGC GGTGCTCGAC ATGCCCGAGC CCCATCTGAG CCTGGAAAAC ATCAATCAGC AGACCCGCTC GCTGCTGCGG GTCACCGCGG GCGCGGCCCT GGTGCTCGGA CTGTTGTGGG TCTGGGCGGA GATCCTGCCC GCGCTCACCT GGCTGGAGCG CGTGACCCTG TGGTCACGCA CCATCGCCGT GGGTGATGCC GAGATCCTGA GTCGCGTGAG CCTGCAGGAC TTCCTGCTGG CGATCTTCCT GGGCGTGATC TTCACCCTGG CGGCGCGCAA CCTGCCGGGC CTGGTGGAGA TCCTGCTTTC GCGCAGCACC CAGATGGACG CCTCGGACCG CTACACCGTG ACCACCCTGC TGCGCTACGT GCTGGCGGTG ATCGCGGTGA TCAGCGTGTT CTCCCTGCTG GGCCTGCGCT GGAGCGAGCT GCAGTGGATG GTCGCGGCCC TGACCCTGGG CCTGGGCTTC GGCCTGCAGG AGGTGGTGGC CAACTTCGTC TCGGGCATCA TCATGCTGTT CGAACGCCCG GTGCGCGTCG GCGACACCAT CACCATCGGT GAATACAGCG GCACCGTGGC GCGCATCCGC ACCCGCGCCA CCACCATCGT CGACTGGGAC AACCGGGAGA TCGTGGTGCC CAACAAGAAC TTCATCACCG AGCGCCTGAT CAACTGGACC CTCTCAGACA CCATGACCCG CATCGTGATC CCGGTGGGCG TGAGCTACGA TGCCGACGTG GACGAGGTGA TGGGCACCCT GAAGACCATC GCCGAAGAGA GCCCGCTGGT ACTCAAGGAG CCGGCGCCGA CCGTGTTTTT CCTGAAGTTC GGTGACAGCG CCCTGAGCTT CGAGCTGCGG GTCTACGTCA ATGCGATGAA GGACCGGCTG ATCACCATCA GTGAGCTGCA CCGGAGCATC ATCAAGTCGT TCCGCGACAA GGGCATCGAG ATCGCCTACC CGCAGATGGA CATCCACGTG CGCGACCTGC CCCCGGCCAA GCGCGCGGGT CAGGGGCACC CGGAACCGCC CAGGCCGGAT CCGCAGGCGA CCTGA
|
Protein sequence | MRLPSKTLQR LLILAVLLPW FAFATAQDMN GAVGPAMPAV SPQQLLELRA TLQDNRPRLV QMAEMIDTTQ AEGWLEASPA SRFAERMAAT AEDSAERGMW QAAIDLETEG AERLRGALER AALARSAGER IDEAVQRITL MLGTQPRTGD DTSLSAIEAD IATLERRRAQ VLLEQEQKRQ TLERLDTQAR TQAELLERLR QGLADGPVAM PWGPLEETAL SDALAAWEQA QARRAEARLL AAQLDGQTVA PRTEILRLEL RVLETEVQWL AQRVAQMSTE YAERSGEELR ALRDDIRRLT EREPEAAQRF STEIEALLKR IDRIAQVQSR VRALQVERER YTQLEADLTQ TLSGVRERLE IGGLTDVLGG LLMEEERRVR KLADLRFTLH DLERELAQSR LRDITVRDEL RALPAPAPVF IDDRARFEIL RLQRQVIEIE LQSDEQLTEQ LRNAELRLRT VVERVDELTE VLRESLLWWP SHQPVGLEWA KRILPATLIL LDPGAWREIH SALFSVIFGA PVGTLLTLLL AALLFLGGRG THQQLAQIAE KTAHPFSDRM GLTFQAVGWS LLRVLPVPVL LASTGYRLQQ LPDIGPGVEV LAVVLFGAAL WWLVGHLFLL FSSSKGVGMA HFQWDPLVVR RLRRHLTWYM PLLLLMAAFL ALTFGHPNEL LPDVFGRIGL LATTFLSGLF AWQMLAPRTE SEATEQQERR RRLVRFALAA FTLVLMGLTL AGYLLTVAVL LDRTINTVIV VAAVWLGYSF ATRALLLSES RLVLRRMREQ REKAAALEGS AAVGEGAVLD MPEPHLSLEN INQQTRSLLR VTAGAALVLG LLWVWAEILP ALTWLERVTL WSRTIAVGDA EILSRVSLQD FLLAIFLGVI FTLAARNLPG LVEILLSRST QMDASDRYTV TTLLRYVLAV IAVISVFSLL GLRWSELQWM VAALTLGLGF GLQEVVANFV SGIIMLFERP VRVGDTITIG EYSGTVARIR TRATTIVDWD NREIVVPNKN FITERLINWT LSDTMTRIVI PVGVSYDADV DEVMGTLKTI AEESPLVLKE PAPTVFFLKF GDSALSFELR VYVNAMKDRL ITISELHRSI IKSFRDKGIE IAYPQMDIHV RDLPPAKRAG QGHPEPPRPD PQAT
|
| |