| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tgr7_2331 |
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| Symbol | |
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| ID | 7318116 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thioalkalivibrio sp. HL-EbGR7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011901 |
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| Strand | - |
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| Start bp | 2452871 |
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| End bp | 2456947 |
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| Gene Length | 4077 bp |
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| Protein Length | 1358 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 643617227 |
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| Product | DNA-directed RNA polymerase, beta subunit |
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| Protein accession | YP_002514398 |
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| Protein GI | 220935499 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.524263 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCCTACA GCTACACCGA AAAGAAACGC ATCCGCAAGG ATTTCGGCAA ACGCCCCCAG
ATCCTCGATG TCCCCTACCT GTTGACCACG CAGCTGGATT CATACCGCCA GTTTCTGCAG
GCCGACCGCA GCGAGGATAA TCGACAGGAC GTGGGCCTGC ACGCGGCGTT CAAGACGGTG
TTCCCCATTG TGAGTTACTC GGGCACCGTT GAACTCGAAT ACGTGAGCTA CCGCCTCGGC
AAGCCGGTGT TCGACGTCAA GGAGTGCCAG CTGCGCGGCA TGACCTATGC CGCTCCCCTG
CGCGTGCTGC TGCGCCTGGT GATCTATGAC AAGGACGCCC CTGCGGGCTC CCGCGTGGTC
AAGGACATCA AGGAGCAGGA AGTCTACATG GGCGAACTGC CGCTCATGAC CGAGAACGGC
ACCTTCGTGA TCAACGGTAC CGAGCGGGTG ATCGTCTCCC AGCTGCACCG TTCGCCGGGC
GTGTTCTTCG ACCACGACAA GGGCAAGACA CACAGCTCGG GCAAGCTGCT GTTCAATGCC
CGCGTGATCC CCTACCGCGG TTCCTGGCTG GACTTCGAGT TCGATCCCAA GGACAGCGTG
TTCGTGCGCA TCGACCGCCG CCGCAAGCTG CCGGCCACGG TGCTGCTGCG CGCCCTGGGC
ATGGAGACCG AGGAGATCCT CGCCACCTTC TTCGAGACCA ACACCGTCAG CATCACCAAG
GACGGTTTCG ACATGGAGCT GATCCCCGAG CGTCTGCGCG GTGAAGTGGC AGCCTTCGAC
TTCAAGGTGA AGAACAAGGT GCTGGTGGAA AGCGGGCGTC GCATCACCGC CCGTCACGTG
CGCGAGCTGG AGGCCGCCGG GATCAAGTCC CTGGAAGTGC CCGCCGAGTA CCTGGTGGGC
AAGGTGCTGG CCCACGCGGT CATCGACGAG GACAGCGGCG AGCTGGTGGC CAACGCCAAC
GACGAGATCA CCGATGAGCT GCTGAAGAAG CTGCGCGCCG CCGGCATCAA GTCGTTCAAG
ACCCTGTACA CCAACGACCT GGACCACGGT CCGTATATCT CCACCACCCT GAACATCGAC
ACCTGCCGCT CCCAGCTGGA GGCGCAGGTG GAGATCTACC GCATGATGCG TCCCGGCGAG
CCCCCCACCA AGGAGGCCGC GGAGAACCTG TTCAACAACC TGTTCTTCAC CGAGGAGCGC
TACGACCTCT CCGCCGTGGG CCGCATGAAG TTCAACCGTC GCGTGGGCCG CGAGGAGATC
ACCGGTCCCG GCGTGCTGGA CAAGGACGAC ATCCTGGCGG TGCTCAAGAC CCTGATCGAC
ATCCGCAACG GCAACGGCCA GGTGGATGAC ATCGACCACC TGGGCAACCG CCGCGTGCGT
TCCGTGGGCG AGATGGCGGA GAACGTCTTC CGTGTCGGCC TGGTGCGCGT CGAGCGCGCC
GTGAAGGAGC GCCTGAGCGT CGCCGAGAGC GAAGGCCTCA TGCCCCAGGA ACTGATCAAC
GCCAAGCCCG TGGCGGCGGC GGTGAAGGAG TTCTTCGGCT CCAGCCAGCT GTCCCAGTTC
ATGGACCAGA ACAACCCGCT CTCCGAGGTG ACCCACAAGC GCCGCATCTC GGCCCTGGGC
CCCGGCGGCC TGACCCGCGA GCGTGCCGGC TTCGAGGTGC GCGACGTGCA CCCGACCCAT
TACGGCCGCG TGTGCCCGAT CGAGACCCCT GAAGGTCCGA ACATCGGTCT GATCAACTCC
CTCGCCGTGT ATGCACGTAC CAACGATTAC GGTTTCCTGG AGACCCCCTA CCGCAAGGTG
GAAAACGGCA AGGTGACCAA CGAGATCGTG TACCTGTCCG CCATCGAGGA AGGCCAGTAC
GTGATCGCCC AGGCCAACGC CAGTCTGGAT GCCAAGGGCA ACCTGGTGGA CGAACTGGTG
TCCTGCCGCC ACGCCAATGA ATTCACCATG TCCACCCCGG ACAAGATCGA GTTCATGGAC
ATCTCGCCCA AGCAGATCGT GTCCGTGGCC GCCGCGCTGA TCCCGTTCCT GGAGCACGAC
GACGCCAACC GCGCGCTGAT GGGCTCCAAC ATGCAGCGCC AGGCCGTGCC CTGCCTGCGT
GCCGAGACCG CCGTGGTGGG GACCGGCATC GAGCGCACCG TGGCCATCGA CTCCGGTTCC
TCCATCGTCG CCCGCCGTGG CGGCGTGGTG GACTCCGTGG ACGCCGCCCG CATCGTGGTG
CGCGTCAATG ACGATGAGAC CGAGGCTGGC GAGCCGGGCG TGGACATCTA CAACCTGACC
AAGTACACCC GCTCCAACCA GAACACCTGC ATCAACCAGC GTCCGCTGGT GAACGTGGGG
GACGTGCTGG CCCGGGGCGA CGTGCTGGCC GACGGTTCCT CCACGGATCT GGGCGAGATG
GCCCTGGGGC AGAACATGAT GGTCGCCTTC ATGCCCTGGA ACGGCTACAA CTTCGAGGAC
TCCATCCTCA TCTCCGAACG CGTGGTGCAG GAGGATCGTT TCACCTCCAT CCACATCGAG
GAGCTGACCT GCGTGGCCCG CGACACCAAG CTCGGGCCGG AGGAGATCAG CGCGGACATC
CCGAACGTGT CCGAGAGCCT GCTCTCCAAG CTGGATGAGT CCGGCATCGT GTACGTGGGC
GCCGAGGTCA AGCCCAACGA CATCCTGGTG GGCAAGGTCA CGCCCAAGGG CGAGACCCAG
CTGACCCCGG AAGAGAAGCT GCTGCGCGCC ATCTTCGGTG AGAAGGCCTC CGACGTGAAG
GACACCTCCC TGCGCGTGCC CTCCGGCATG GAAGGCACTG TGATCGACGT GCGCGTGTTC
ACCCGCGACG GCGTCGACAA GGACAAGCGT GCCCTGCAGA TCGAGGAGGC GGCGCTGGCC
GCCGTGCGCA AGGATCTCAA GGACCAGCTG CGCATCTACG AGGACGACAT CTACGACCGC
GTCGAGAAGC TGCTGGTGGG CAAGCTGGCC GCCGGTGGCC CCAACAAGCT CAAGGACGGC
ACCAAGGTCA CCAAGACCTA CCTTACCGAG GTGCCCCGCG AGAAGTGGTT CGAGGTGCGC
ATGCGCACCG AAGAGGTCAA CGAGCAGCTG GAGAAGATGG CTGCATCCCT GAAGGAGCAG
CACGAGGCCT TCGAGACCCG CTTCAAGGAG CAGAAGGAAA AGCTCACTCA GGGTGACGAT
CTCGCCCCCG GCGTGCTGAA GATGGTCAAG GTCTACCTGG CCGTGAAGCG CCGCATGCAG
CCCGGCGACA AGATGGCCGG CCGCCACGGT AACAAGGGTG TGGTCTCCAT GATCGTGCCC
GTGGAAGACA TGCCGTATCT GGAAGACGGC ACCCCCGTGG ACATCGTGCT CAACCCGCTC
GGCGTGCCTT CCCGTATGAA CGTGGGTCAG GTGCTCGAGA CCCATCTGGG CTGGGCCGCC
AAGGGTCTGG GCCAGAAGAT CGGCCGCATG GTCGAGGCCA AGGCCAAGAT CGACGAACTG
CGCAAGTTCC TCGACAAGAT CTACAACCAC AGTGCCAAGA AGGTGGATCT GTCCGATTTC
AGCGACGAGG AGATCCTCAA GCTGTGCGCC AACCTGAAGA AGGGCGTGCC CATGGCGACC
CCGGTGTTCG ACGGTGCCGA GGAAGAAGAG ATCAAGGCCA TGCTGAAGCT GGCCGATCTG
CCCGAGAGCG GTCAGACCAC CCTGTTCGAC GGTCGTACCG GCGAGTCCTT CGACCGTCCC
GTGACCGTGG GTTACATGCA CATGCTCAAG CTCAACCACC TGGTGGATGA CAAGATGCAT
GCCCGTTCCA CCGGTCCGTA CAGCCTGGTG ACCCAGCAGC CGCTGGGTGG TAAGGCGCAG
TTCGGTGGTC AGCGCTTCGG CGAGATGGAG GTCTGGGCGC TGGAGGCCTA TGGCGCCGCC
TACACCCTGC AGGAGATGCT CACGGTGAAG TCCGACGACG TTCAGGGCCG CAACAAGATG
TACAAGAACA TCGTCGACGG CGACCACCGG ATGGAGGCGA ACATTCCGGA GTCCTTCAAC
GTGCTGATGA AGGAAATCCG TTCGCTGGCC ATCAACATCG AGCTGGAACA GGACTAA
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| Protein sequence | MAYSYTEKKR IRKDFGKRPQ ILDVPYLLTT QLDSYRQFLQ ADRSEDNRQD VGLHAAFKTV
FPIVSYSGTV ELEYVSYRLG KPVFDVKECQ LRGMTYAAPL RVLLRLVIYD KDAPAGSRVV
KDIKEQEVYM GELPLMTENG TFVINGTERV IVSQLHRSPG VFFDHDKGKT HSSGKLLFNA
RVIPYRGSWL DFEFDPKDSV FVRIDRRRKL PATVLLRALG METEEILATF FETNTVSITK
DGFDMELIPE RLRGEVAAFD FKVKNKVLVE SGRRITARHV RELEAAGIKS LEVPAEYLVG
KVLAHAVIDE DSGELVANAN DEITDELLKK LRAAGIKSFK TLYTNDLDHG PYISTTLNID
TCRSQLEAQV EIYRMMRPGE PPTKEAAENL FNNLFFTEER YDLSAVGRMK FNRRVGREEI
TGPGVLDKDD ILAVLKTLID IRNGNGQVDD IDHLGNRRVR SVGEMAENVF RVGLVRVERA
VKERLSVAES EGLMPQELIN AKPVAAAVKE FFGSSQLSQF MDQNNPLSEV THKRRISALG
PGGLTRERAG FEVRDVHPTH YGRVCPIETP EGPNIGLINS LAVYARTNDY GFLETPYRKV
ENGKVTNEIV YLSAIEEGQY VIAQANASLD AKGNLVDELV SCRHANEFTM STPDKIEFMD
ISPKQIVSVA AALIPFLEHD DANRALMGSN MQRQAVPCLR AETAVVGTGI ERTVAIDSGS
SIVARRGGVV DSVDAARIVV RVNDDETEAG EPGVDIYNLT KYTRSNQNTC INQRPLVNVG
DVLARGDVLA DGSSTDLGEM ALGQNMMVAF MPWNGYNFED SILISERVVQ EDRFTSIHIE
ELTCVARDTK LGPEEISADI PNVSESLLSK LDESGIVYVG AEVKPNDILV GKVTPKGETQ
LTPEEKLLRA IFGEKASDVK DTSLRVPSGM EGTVIDVRVF TRDGVDKDKR ALQIEEAALA
AVRKDLKDQL RIYEDDIYDR VEKLLVGKLA AGGPNKLKDG TKVTKTYLTE VPREKWFEVR
MRTEEVNEQL EKMAASLKEQ HEAFETRFKE QKEKLTQGDD LAPGVLKMVK VYLAVKRRMQ
PGDKMAGRHG NKGVVSMIVP VEDMPYLEDG TPVDIVLNPL GVPSRMNVGQ VLETHLGWAA
KGLGQKIGRM VEAKAKIDEL RKFLDKIYNH SAKKVDLSDF SDEEILKLCA NLKKGVPMAT
PVFDGAEEEE IKAMLKLADL PESGQTTLFD GRTGESFDRP VTVGYMHMLK LNHLVDDKMH
ARSTGPYSLV TQQPLGGKAQ FGGQRFGEME VWALEAYGAA YTLQEMLTVK SDDVQGRNKM
YKNIVDGDHR MEANIPESFN VLMKEIRSLA INIELEQD
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