| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tgr7_2072 |
|---|
| Symbol | |
|---|
| ID | 7316462 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thioalkalivibrio sp. HL-EbGR7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011901 |
|---|
| Strand | - |
|---|
| Start bp | 2199534 |
|---|
| End bp | 2201267 |
|---|
| Gene Length | 1734 bp |
|---|
| Protein Length | 577 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 643616965 |
|---|
| Product | glycoside hydrolase, family 57 |
|---|
| Protein accession | YP_002514139 |
|---|
| Protein GI | 220935240 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1449] Alpha-amylase/alpha-mannosidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTGCGCTG AGCGCGCGCG GGGAGGCAAG CCCGCGCCGC TCAGGGTGGT GCTGTGCTGG
CACATGCACC AGCCTCAGTA TCGGGACGTG CAGGCACGTC GCTACGCCCT GCCGTGGACC
TACCTGCACG CCATCAAGGA CTACGTGGAC ATGGTCGCCC ACCTGGAGGC GGCCCCCGGC
GCGCGGGTGG TGGTCAACTT CGCCCCGGTG CTGCTGGAAC AGATCGACGA CTACGCCCGG
CAGGTGCATG ACAACCTCGA TCATGGCGCC GAGATCCGTG ACCCGCTGCT CGCGGCGCTC
GCCGCCGAGA CCCCGCCCGC CGGCGAGGCC GAGCGCCTGC AGCTTGCCGA GGCCTGTCTC
AAGGCCAACC AGAAACACCT GATCGAACCC TATCCCGACT ACCGCATGCT CACCCAGATG
GTGCACTGGC TGCGGGAGCA TCCGGCGGGG CTTGCCTACC AGTCCGAGGG CTTTTTCGCC
GACCTGGTCA CCTGGTACCA CCTGGCCTGG CTGGGGGAGA CGGTGCGCCG GGAAGACGGG
CGTGTGCGTG CCCTGATGGA GAAGGGGCGG GGGTTCGATC TGCACGACCG CCGCACCCTG
CTCACGGTGA TCGGCGAGAT CCTGGCATCG GTCCTGCCCC GCTACCGCAA GCTGGCGGAG
GCGGGGCGCG TGGAACTGGC CTTCAGCCCC TACGCCCATC CCATCGTGCC CCTGCTGCTG
GACCTGCGCG CCGCCCGGGA GTCACTGCCC GAGGCTCCCC TGCCCGCCGC AAAGGCCTAT
CCGGGGGGCG AGGAGCGGGT GCGCTGGCAT CTGGATCGGG GCATGGCGGT CTTCGAACGC
TATTTCGGCC GCAAGCCCCT GGGTTGCTGG CCTTCGGAGG GTGGTCTGAG TACCGCCACG
GTGCGCCTGC TCTCCGAGCA CGGCATCCGC TGGACCGCCA GCGGCGAGAC CGTGCTGGCC
AACAGCCTGC GCGAGGCCGG CGCCCTGGAG GAGGGCGAGG ACCGCCGCTG GCTGCACCGT
CCCTACCGGG TGGAAAAGTC GGACACCGCC TGCTTCTTCC GCGACGATGG CCTCTCGGAT
GCCATCGGCT TCAAGTACGC CGACTGGCAC GCGGACGACG CCGTGGGGGA GTTCGTGCAC
CACCTGGAGA CCATCGCCGC CCGGGGTGTC GAGCCCGACA CGGTGGTCTC CGTGATCCTG
GACGGGGAAA ACGCCTGGGA GTACTACCCC GCCAACGGCT ATCATTTCCT GACCGCCCTG
TACGCGCGCC TGTCGGATCA TCCGCTCATC GAGATGACCA CCTTTGCCGA CTGTGTGCAG
GCCATTCCCG CGCCCCGCGC CCTGTCCAGA CTGGTGGCCG GCAGCTGGGT GTATGGCACC
TTCTCCACCT GGATCGGCGA CAAGGACAAG AACCGGGGCT GGGAACTGCT CATCGAGGCC
AAGCAGCACC TGGACACGGC GATCCGCGCA GGGCGTCTGG GCGGTGAACG CCTGCAACAG
GCCCTGGAAC AGCTGGCCAT CTGCGAGGGC TCGGACTGGT GCTGGTGGTT CGGCGACTAC
AACCCGGCCG TCGCGGTGAG CGATTTCGAG CGCCTCTACA GGCATCACCT GGCGGTGCTC
TACGAACTCA TGGGCGAGCC GGTGCCCGAG GTCCTGTCCA GGGTATTGAC CCATGGCGGC
GGTCATCCCG CTGCGGGCGG CACCATGCGC CGGGGCAGTG AAGGTCATCA ATGA
|
|---|
| Protein sequence | MCAERARGGK PAPLRVVLCW HMHQPQYRDV QARRYALPWT YLHAIKDYVD MVAHLEAAPG
ARVVVNFAPV LLEQIDDYAR QVHDNLDHGA EIRDPLLAAL AAETPPAGEA ERLQLAEACL
KANQKHLIEP YPDYRMLTQM VHWLREHPAG LAYQSEGFFA DLVTWYHLAW LGETVRREDG
RVRALMEKGR GFDLHDRRTL LTVIGEILAS VLPRYRKLAE AGRVELAFSP YAHPIVPLLL
DLRAARESLP EAPLPAAKAY PGGEERVRWH LDRGMAVFER YFGRKPLGCW PSEGGLSTAT
VRLLSEHGIR WTASGETVLA NSLREAGALE EGEDRRWLHR PYRVEKSDTA CFFRDDGLSD
AIGFKYADWH ADDAVGEFVH HLETIAARGV EPDTVVSVIL DGENAWEYYP ANGYHFLTAL
YARLSDHPLI EMTTFADCVQ AIPAPRALSR LVAGSWVYGT FSTWIGDKDK NRGWELLIEA
KQHLDTAIRA GRLGGERLQQ ALEQLAICEG SDWCWWFGDY NPAVAVSDFE RLYRHHLAVL
YELMGEPVPE VLSRVLTHGG GHPAAGGTMR RGSEGHQ
|
|---|
| |